Polaromonas vacuolata: HC248_01753
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Entry
HC248_01753 CDS
T06542
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pvac
Polaromonas vacuolata
Brite
KEGG Orthology (KO) [BR:
pvac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvac03019
]
HC248_01753
Enzymes [BR:
pvac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HC248_01753
Messenger RNA biogenesis [BR:
pvac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HC248_01753
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
WHD_HA2
AAA_22
NACHT
AAA_19
T2SSE
nSTAND3
AAA_25
SRP54
nSTAND_NTPase5
AAA_30
PhoH
Motif
Other DBs
NCBI-ProteinID:
QJC56447
UniProt:
A0A6H2H9J9
LinkDB
All DBs
Position
complement(1899652..1903542)
Genome browser
AA seq
1296 aa
AA seq
DB search
MIIEFPESLPVSGKREEIMAAMAAHQVIIVCGETGSGKTTQLPKIALSMGRGKLNYPAGQ
RARMIGHTQPRRIAASSVAKRIAEELKTPLGDVVGYKVRFADRLSRDASVKLMTDGILLA
ETQTDPLLQAYDTIIIDEAHERSLNIDFLLGYLRQLLPRRPDLKVVITSATIDAQRFADY
FASSKGPAPTIMVSGRMFPVEQRYRPFEESRDYDLNNAIADAVDELWLSPHSAGDILVFL
PGEREIREAADHLRKHLSHQPLNRNAEVLPLFARLSPAEQDRIFDGHTGRRIVLATNVAE
TSLTVPGIRYVVDAGTARVKRYSFRSKVEQLMVEPVSQAAANQRAGRCGRVADGICIRLF
DEQDYLGRPRFSDPEILRSSLAGVILRMKSLHLGAIEDFQFIDMPQRRAITDGYQLLNEL
GAVNDDNVLTPTGWTLAKLPLDPRVGRMILEAKDRQALDEVLVIASALSVQDVRDRPMDK
QSQADQAHAKFEDEKSEFSGYLKLWKWLGDSRGGHDAEHKLSNRQHENLLRENFINVRRL
REWRDIHSQLLSVVAEQGWVINDRPASYEQLHLSMLCGLLGNIGCKSDEDDWYLGARGIK
FYRHPGAKLSKKPGRWLVAAELVETTRVFGRGLANIDPAWMEQVGGHLLRKQLLDPHWEK
KAAQVTALERATLYGLVVYNGRRVNFGRVDPVTAREIFIREALVAGNWETKLAFLTANQR
LVEKVQDIEHKARRQDVLVDEELIYAFYDQQLPHDICTGAGCESWFKDEVKKQPKLLLLT
QEELMRHEAAGITTDSFPKTMRLGGVDCSATYLHEPGDAKDGVTVEVPLFALNQVNEDRC
EWLVPGMLKDKIQALIKTLHQRPRSRLVPLPDTATRMAAQLNTPELFGSGSLTDAVLKLV
REATAVEIKRGDLKLEMLAPHLFMNFRVVDEHGRQLGSGRSLAGLKGELGSQARGAFQAL
AGLKNLNLAVQKMPATSAVNSTAIAAQGVPKSSARAQPEPVVAKVAERYTNWTFGELPEL
MEIRKGKQTLIGFPALIDLQDAVTIEVFDEPDIAMQRHRAGLRRLFSLQIKDALKYLEKN
LPDLQKMAAAYMLVGRHADNSGGGTIEELRVQILEVALDRAFLLEPLPTTELEFKKRVDE
GRGRLTLIASEVSRMAAGILTEFSAAQRKIKDSKNAVDAAADAAAQLQRLMPKRFLTTSP
YLQLQHFPRYLKAITARLEKWRADPARDTARMAELKPQEQRYWRLVAERKGALDARMQEF
RWLLEEIRVSFFAQELRTPQPVSIKRLEKLWVQLNS
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgattattgagttccccgaatcactccccgtctctggcaaacgcgaagaaatcatggcc
gccatggcggcccatcaagtcatcatcgtgtgcggcgaaacgggctcgggtaagaccacc
caactgcccaaaatagccttatccatggggcgtggcaaactcaattacccggccggtcag
cgtgcccgcatgattggccacacccagccacgacggattgccgcgtctagcgttgccaaa
cgaatcgcagaagaacttaaaaccccactcggcgatgtggtgggctacaaagtgcgattt
gcagacaggttaagccgcgacgcctcagtcaagctgatgacagacggtatcttgctggcc
gagacacagactgaccctttgctgcaagcgtatgacaccatcatcatcgacgaggcccat
gagcgcagcctaaacatcgattttttactcggctacctgcgccagttgttgccgcgtcgg
ccggatcttaaagtcgtgattacatcggccaccattgatgcgcagcgctttgccgactac
tttgcctctagcaaagggcctgcgcccaccatcatggtgtctggccgcatgtttccggtc
gagcagcgttatcggccgtttgaggagtcgcgtgactatgaccttaacaatgcgattgcc
gatgcggtcgatgagttgtggcttagcccgcacagcgccggtgatatcttggtgtttttg
cccggcgagcgcgaaattcgcgaagctgcagaccatttgcgcaagcatttgtcgcatcaa
ccgctgaaccgcaacgccgaagtcttacccttgttcgcgcgtttaagcccggccgagcaa
gaccggatttttgacggccacaccggcagacgcattgtgctggccaccaacgtagccgag
acctcgctcaccgtacccggcatacgctatgtggtcgatgcggggactgcccgcgtcaag
cgctacagctttagaagcaaggtcgagcaactcatggtcgagccagtctcgcaagcggct
gcgaaccagcgcgcgggccgctgcggccgtgttgctgacggtatttgtatacgcctgttt
gacgagcaagactatttaggccggccgcgtttttctgatcctgagattttgcgtagctct
ttagcgggcgtgattttgcgcatgaagtcactccacttaggggcgattgaagactttcaa
ttcatagacatgccgcagcgccgagcgattactgatggctatcaattgctcaatgaatta
ggtgctgtcaacgacgacaacgtgctgaccccaaccggttggaccttggccaaattgccg
ctagaccctagagtgggccgcatgattttggaagccaaagaccgacaagcgctagatgaa
gtcttggtgattgccagcgcgctgagcgtgcaagatgtgcgcgaccgcccaatggataaa
cagtcccaagccgatcaagcgcatgccaagtttgaagatgaaaaaagtgaattctctggc
tacttaaagctgtggaagtggctgggtgattcccgaggtggccatgatgcagagcacaag
ctcagcaaccgccagcatgaaaacttattgcgcgagaacttcatcaacgtcaggcgcttg
cgcgagtggcgcgacatccattcccaactgctcagcgtggtggcagagcagggctgggtt
atcaacgacagaccggccagctatgagcaattacacctgtcaatgctctgcggtttgctc
ggcaatatcggttgcaaaagcgatgaagacgattggtatttgggcgcgcgcgggattaag
ttttatcggcacccgggcgccaaattaagcaaaaaacccggtcgctggttggtcgctgct
gaattggttgaaactactcgcgtgttcggtcggggtttagccaatattgaccccgcttgg
atggaacaagtcggcggtcatttgctgcgcaagcaactactagacccgcactgggagaaa
aaagcggcgcaagtcaccgcacttgagcgcgccacgctatacggtttggtggtctataac
ggcagacgggttaattttggccgggttgatccggttacagcacgcgagattttcatacgc
gaagccttggtcgctggcaactgggaaaccaaactggcatttttaaccgccaaccagcgt
ctagtcgaaaaagtccaagacatagagcacaaggctagacgccaagacgtgctggttgac
gaagagctgatttatgcgttctacgaccaacaattgccgcatgacatttgcaccggcgcg
ggctgtgagagctggtttaaagatgaggtgaaaaagcagcctaagctcttgctgctgacc
caagaagagctgatgcgccatgaagcggctggcataaccaccgattcttttcccaaaacc
atgcgcttgggcggcgttgattgcagcgccacttatctgcatgagccgggcgacgcaaaa
gatggtgtgacggtagaagtgccgctgtttgcactgaatcaagtcaacgaagaccgctgt
gaatggcttgtgccaggcatgctcaaagacaaaatccaagccttgatcaaaaccttgcat
caacggccgcgctcgcgcttagtgcccttgccggacacggccacgcgcatggctgcccag
ctcaatacaccggagctgtttggcagcggttctttgaccgatgcggtactgaagttagtg
cgggaagcgactgcggtagagatcaaacgcggcgacttaaaactcgaaatgctggcgcca
catttgttcatgaactttagggtcgtcgatgagcatggtcggcaactgggctcgggtcgc
tctctcgcaggactaaagggcgagttgggtagccaagcgcggggtgcatttcaggctttg
gccgggcttaaaaacttaaaccttgccgtgcaaaaaatgcctgcaacttcggccgtaaac
tcgacagcgatagcagcgcaaggcgttcccaaaagttccgctagagcgcagcctgagcca
gtagtcgcaaaagtcgcagagcgctacaccaattggacttttggtgagttgccagaactc
atggaaatccgcaaaggcaagcaaaccttgattggctttccggctcttattgatctgcaa
gacgccgttacgattgaagtgtttgacgaacccgatatcgccatgcagcggcaccgcgcc
ggtctgcgacgattattttctttgcaaattaaagacgcgcttaaatatcttgaaaaaaat
ctgccggatttacaaaaaatggcagcggcttacatgctggttggtcgccatgcagataat
tcaggcggcggcacgatagaggagttgcgcgtgcaaattctagaagtcgcgctagaccgg
gcctttttgctagagcccttgccgactactgagctagagtttaaaaagcgcgtggatgaa
gggcgagggcgtctgactttgatcgccagcgaagtctcacgcatggccgctggcatattg
actgaattttctgccgcacagcgaaaaatcaaagacagtaaaaacgcagtcgatgccgca
gccgacgcagccgcccaattgcaacgcctaatgcctaagcgctttttaacaaccagccct
tatttgcaattgcagcactttccgcgttaccttaaagcgattactgcacggcttgaaaaa
tggcgcgcagacccagcaagagatactgccaggatggcagaactaaagccgcaagagcaa
cgctattggcgtttagtggccgagcgcaaaggcgcattggatgcgcgtatgcaagagttt
cgctggttgcttgaagaaattagggtgagttttttcgcccaagaattacgcacaccgcag
ccagtcagtattaagcgattggaaaaattgtgggtgcaactcaatagttag
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