Polaromonas vacuolata: HC248_02349
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Entry
HC248_02349 CDS
T06542
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pvac
Polaromonas vacuolata
Pathway
pvac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HC248_02349 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvac03019
]
HC248_02349 (rnr)
03016 Transfer RNA biogenesis [BR:
pvac03016
]
HC248_02349 (rnr)
Enzymes [BR:
pvac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HC248_02349 (rnr)
Messenger RNA biogenesis [BR:
pvac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HC248_02349 (rnr)
Transfer RNA biogenesis [BR:
pvac03016
]
Prokaryotic type
tRNA degradation factors
HC248_02349 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QJC57037
UniProt:
A0A6H2HB94
LinkDB
All DBs
Position
complement(2535083..2537392)
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AA seq
769 aa
AA seq
DB search
MAEYEGTVSGHRDGHGFVLRDDGESDIYLPQNEMRAVLHKDRVKVRIVRQDRKNRPEGRI
TEILERSSNPIIGRLLQESGVWLVAPEDKRYGQDVLIPKGATGLAKTGQIVVVKLTEPPA
LFGQPVGRIEEVLGEIDDPGMEIEIAVRKYGVPHDFSDAAIALARTLPDAVRPTDKNGRV
DLTDIALVTIDGEDARDFDDAVYCEPAKVGRGKGWRLLVAIADVSHYVETGSAIDIDAYD
RATSVYFPRRVIPMLPEKLSNGLCSLNPNVERVCMVCDMLVNAKGEVHAYQFYPAVMFSH
ARFTYTEVAAILANTRGPEAAQRKALVPHLLNLHDVYQALLQERGVRGAVDFETTETQIV
CDEVGRIEKIVPRTRNVAHKLIEEAMLAANVCSADFIAQSKHIGLFRVHEGPSPEKKDAL
RNYLKAIGLGMTISDDPTPGEFQKIAQATKDRPDAPQIHTMLLRSMQQAIYTPMNNGHFG
LAFEAYTHFTSPIRRYPDLLVHRVIKAVLAKKKYQLPVLPTPGEAEAKLSKRLSSRVKDP
EQKPKKLSGDELAWQAAGLHCSANERRADEASRDVEAWLKCKYMREHLGEEFGGVVTAAT
GFGIFVTLDAMYVEGLVHITELGGEYFRFDEARQELRGERSGLRYAIGTRVRVQVSRVDL
DGRKIDFRLLHEGDDLLAAGARGGRDKGGDKGGAHGADQPPQERGKRAPRADRAGVPSAG
RGEKSSARSERSASRSATSPIQAPKAAVKKSTGKSTEKVGRKPGKKTRR
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
ttggcagaatacgaaggcacggtatcgggccatcgcgatggccatggttttgttctgcgc
gacgatggcgaatcagatatttatctgccgcaaaatgagatgcgcgccgtactgcacaaa
gaccgcgtcaaagttcgcatagtccgccaagaccgaaaaaatcgtcctgaggggcgcatt
actgaaatcttagagcgctcatcaaatcccatcattggccgattgctgcaagaaagcggt
gtctggttagttgcgcctgaagacaagcgttacggtcaagatgtgctcattcccaagggt
gcgactggcttggctaagacgggtcaaatcgtggtggtcaagctcactgaaccaccagca
ctgtttggtcagcctgtcggtcgaatcgaggaagtgttgggcgagattgatgaccccggt
atggaaatcgaaatcgcagtgcgcaaatatggcgtgccacacgatttcagcgatgcagct
attgcactggctcggacgctgccagacgcagtcaggcccacggataaaaacggtcgagtc
gacttgactgatattgcgttggtgacgattgacggtgaagacgcacgcgactttgatgac
gctgtttattgcgagccggctaaggtcggacgcggcaaaggctggcgtttgctggtggcg
attgccgatgtcagccattacgttgagaccggaagtgcgattgatattgatgcttacgat
agagcgaccagtgtttattttccgcgccgcgtcattcccatgctgcccgagaaactctct
aacggcttgtgctcactaaacccgaatgttgagcgtgtctgcatggtttgcgatatgctg
gttaacgccaagggtgaggttcatgcctaccagttttacccggcagtgatgttcagccat
gcgcgttttacctataccgaagttgccgctattttggccaacacacgcggtccagaagcg
gcgcagcgcaaggctttagtgccgcatttactcaatctgcacgacgtctaccaagccttg
ctgcaagagcgcggcgtgcgcggcgcagttgattttgaaaccaccgaaacgcagatagtt
tgcgacgaggtcggccgcattgaaaaaatagtgccgcgcactcgtaacgtggcgcacaag
ctgattgaagaggccatgttggcggccaacgtttgctctgctgactttatcgcccagagc
aagcatatcggtttgtttcgcgtgcacgagggcccgtcgcctgagaaaaaagacgcgctg
cgtaattacctcaaggccattggtctgggaatgacgattagcgatgacccaacgcccggc
gaatttcagaaaattgcccaagccaccaaggacaggccagacgcgccgcaaattcacacc
atgctgctgcgttccatgcagcaggcgatttacacgcctatgaataacggccatttcggt
ttggcgtttgaggcttatacccactttactagcccgattcggcgctatcccgatttactg
gttcatcgcgtcatcaaggcagttttagcgaagaagaaataccagttgccggtgttgcca
acgccgggcgaggctgaagccaagctctctaagcgtctttcctcacgcgttaaagacccg
gagcaaaagcctaaaaaactcagcggtgatgaacttgcatggcaagccgctggcctgcat
tgcagcgccaacgagagacgcgcagacgaagctagccgcgatgtcgaagcctggcttaaa
tgcaaatacatgcgtgagcatttgggcgaggagttcggcggtgtggtcacggccgctacc
ggttttggtatttttgtcacccttgacgcgatgtatgttgaaggtttggtgcatatcacc
gagctgggcggtgagtacttccgattcgacgaggcgcgccaagagttgcgcggcgagcgt
agcgggctgcgctacgcgataggcacgcgggtcagggtgcaggtcagccgggttgatctc
gatggccgcaagattgatttccgtctgctgcatgagggtgatgatttactcgctgcaggc
gcacgcggtggccgtgataaaggcggcgataagggcggtgctcatggtgcggatcagccg
cctcaagaacgcggtaaacgcgcaccacgcgcagatcgagccggtgttccgtctgcgggc
aggggtgaaaaatccagcgcacgttcagagcgcagcgctagccgatccgcaacttcgccc
attcaagcgcccaaggcagcggtgaaaaaatcgacgggtaagtcgaccgaaaaagtcggc
cgcaagccgggtaaaaaaacgcggcgctaa
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