Polaromonas vacuolata: HC248_02494
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Entry
HC248_02494 CDS
T06542
Symbol
rhlE_3
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pvac
Polaromonas vacuolata
Pathway
pvac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HC248_02494 (rhlE_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvac03019
]
HC248_02494 (rhlE_3)
Enzymes [BR:
pvac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HC248_02494 (rhlE_3)
Messenger RNA biogenesis [BR:
pvac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HC248_02494 (rhlE_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
QJC57173
UniProt:
A0A6H2HBK2
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All DBs
Position
2694904..2696763
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AA seq
619 aa
AA seq
DB search
MTFENLNLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGGDLLGGAQTGTGKTAAFTLPLL
QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYTDLTSMVMFGGVGMGAQ
IEKLRRGVDILVATPGRLLDHASQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVP
KQKQVLLFSATFSDEIRDLANGLLRDPAHIQVTPRNTTVQRITQTIHPVGRSKKKALLTH
IINEHNWSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTIRA
LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCMDEEGFMQ
DIERFTKQNIDKVVVPGFEADPDERAEPLAMGRQTIWGGLGKPPSRDVMQAAAKAARSEM
MQRIRDTKGAQPARGAGNGGGGRNAGSPGGRSGGGNAGNTGNTGNTGNGGGGYSNNGGGN
GGNGGGSNGGNGYGRGPRTPNPGQPRMNSGYGQPSGQQRQAHAPRPAREDQQPRMDPRNN
EPRHDSRNNFDDQQPSSHASSGFPSSGQPSGNRNNFRGARPAGGGGGGGGRGGNNGGGNG
GGNGGPRRSNGGGSGPYGR
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaaaatctgaatctggctccggccattcttaaagctgtgcttgagcagggc
tacgacacaccgacacctattcaagcccaagccattccggccgtgctcgcaggtggtgac
ttactcggtggcgcacagaccggcaccggtaaaaccgcagccttcacgttgcctttgctg
cagcgcctgtccaccgagccacgcctgaccaatcgccgcggtgttaacgccgtgcgcgca
ctgatcatgacgccaacccgcgaactcgcggcgcaggtcgaagaaagcgttcgcacctac
ggcaaatacacagacctgacctctatggtgatgtttggcggtgttggcatgggcgcacaa
atagaaaaactgcgccgcggcgttgacatcttggtggccacaccaggccgtctgctagac
cacgccagccaaggtactttggacctgagccaggtgcaaattttggtactcgacgaagcc
gaccgtatgttggacatgggctttatccatgacatcaaaaaagtgctggccttggtgcca
aagcaaaaacaagtgctgctgtttagcgccacttttagcgacgagattcgtgacttggcc
aacggcttgctacgcgacccagctcacattcaggtcacaccgcgcaacaccacagtgcag
cgcatcacgcaaaccattcacccagtcggacgcagcaagaaaaaagccttgctgacccac
atcattaacgagcacaactggagccaggttctggtcttcacgcggaccaagtttggcgcc
aacaatgtggccgagcacttgaccaaaaacggcatcgaagccatggcgctgcatggcaac
aaaagccagactgcacgcacgcaagcgctgcaaggctttaaagacggcacgattcgcgcg
ctggttgcaaccgacattgccgcacgcggtattgatatcgacgagttgccacatgtcgtg
aactatgaaatccctaacgtcagcgaagactacgtgcaccgtattggccgtacagggcgc
gccggtaacagcggtgaagccgtcagcttggtctgtatggacgaagaaggctttatgcaa
gacatcgagcgtttcactaaacaaaacatcgataaagtcgtggtccccggttttgaagcc
gatccagacgagcgcgcagagccgctggccatgggtcgtcaaaccatctggggtggactc
ggcaaaccgcctagccgggatgtgatgcaagccgcggcaaaagctgcgcgcagcgaaatg
atgcagcgtatccgtgacaccaaaggcgcacagcctgcgcgtggcgcgggcaatggcggc
ggcggtcgtaatgcaggcagtcctggcggtcgaagcggcggtggaaacgctggtaacact
ggtaacactggtaacactggtaatggcggtggcggctacagcaataatggcggtggtaat
ggcggtaacggcggcggcagcaatggtggtaacggttatggccgtggtccacgtacgcca
aacccaggtcagccacgcatgaattctggctacggccagccttcaggccagcagcgtcaa
gcccatgcaccgcgccctgcgcgtgaagaccagcagccacgcatggacccgcgcaacaac
gagccgcgtcatgacagccgtaacaactttgacgaccaacaaccgtctagccacgcatcg
tcgggcttcccttcatccggccagccgtcaggcaaccgcaacaacttccgcggcgctcgt
cctgcgggcggcggtggtggtggtggtggtcgcggcggtaacaatggcggcggtaatggt
ggtggcaatggcggcccacgtcgcagcaatggcggcggttcaggcccatacggcagataa
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