Polaromonas vacuolata: HC248_03188
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Entry
HC248_03188 CDS
T06542
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pvac
Polaromonas vacuolata
Pathway
pvac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HC248_03188 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvac03021
]
HC248_03188 (rpoA)
03400 DNA repair and recombination proteins [BR:
pvac03400
]
HC248_03188 (rpoA)
Enzymes [BR:
pvac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HC248_03188 (rpoA)
Transcription machinery [BR:
pvac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HC248_03188 (rpoA)
DNA repair and recombination proteins [BR:
pvac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HC248_03188 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
DUF211
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
QJC57856
UniProt:
A0A6H2HEG8
LinkDB
All DBs
Position
complement(3468220..3469209)
Genome browser
AA seq
329 aa
AA seq
DB search
MQTNLLKPKTINVEPLGVNRAKVTLEPFERGYGHTLGNALRRVLLSSMVGHAATEVTIAG
VLHEYSSIDGVQEDVINILLNLKGVVFKLHNRDEVTLSLRKDGEGPVTAADIQTPHDVEI
INPEHVIVNLSHGGKIDMQIKVENGRGYVPGNQRRYGDESTKSIGRIVLDASFSPVKRVS
YVVESARVEQRTDLDKLVLEIETNGAVTAEDAVRASAKILVEQLAVFAQLEGNELAAFDA
PVQRNSQQFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSL
NEIKEVLASRGLTLGMRLESWPPAGLDKH
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagactaatttactaaaacctaaaaccatcaatgttgagccactgggtgttaatcgc
gccaaagtgactctcgagccgtttgaacgcggttatggccacacactgggcaatgcactg
cgccgcgttttgctgtcctctatggtcggccacgcagctactgaagtgactatcgctggc
gtactccatgagtactcttccatcgatggcgttcaggaagacgttatcaacatcttgctc
aacctcaagggcgtggtgtttaaacttcacaaccgtgacgaagttaccctgagcttacgc
aaagacggcgaaggcccagttactgccgctgatatccagacgccacatgacgtcgagatt
atcaatccggaacatgtgattgtgaatttgtcgcacggcggcaagattgacatgcaaatc
aaggtcgaaaatggtcgtggttatgtacctggtaaccaacgtcgttatggcgacgagtcg
accaaatcaattggacgtattgttcttgatgcttcgttctcgccggttaaacgtgtgagc
tacgttgttgaaagcgcgcgtgttgagcagcgtacagacttagataaattggttttagaa
attgaaaccaacggtgctgtgactgcagaagatgcggttcgtgcatccgctaaaattctg
gttgagcaattggcagtattcgcacagcttgaaggcaatgagttggctgcatttgatgcg
ccagttcaacgcaactcacagcagttcgaccctatcttgttgcgcccagttgacgagctt
gagttgacggttcgctccgccaactgtctcaaggctgagaacatatactacatcggtgac
ttgatccaacgtacggaaaatgagttgttaaaaactcctaatctgggtcgtaaatcactc
aacgaaattaaagaagttctcgcttcgcgtggtcttactttaggtatgcgtcttgaaagc
tggccgcctgcagggctagataaacactaa
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