Planctoellipticum variicoloris: SH412_000035
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Entry
SH412_000035 CDS
T09866
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
pvar
Planctoellipticum variicoloris
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvar03021
]
SH412_000035
Transcription machinery [BR:
pvar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SH412_000035
BRITE hierarchy
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Homeodomain
Asp_decarbox
Motif
Other DBs
NCBI-ProteinID:
WLD09976
LinkDB
All DBs
Position
43910..44899
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AA seq
329 aa
AA seq
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MVATSLAPRNIQRHNHLVAIPVGHTPVEADLRQRAETLLQQKIAYVDQEWFRHPDAETRI
AALEPDAGSGSSRVTSPVAGIAFVSGLVAESPLTGPEEKFLFTRMNFLRFRAAVGQQSLK
PRRPSARQVAQIEADLAEANELRNRIVQANLRLVVSVARKLAGSLDQLSELISEGLLPMI
RAVELFNIQLGNRFSTYATWAVRNQMLRSLKKRKNAHEFNVTEDEISLSQIADPRTDLID
ASSPKSDSEPLIGRMLAQLPERERQILAARFGLNGNPEGQSLAELSEQFGLSKERVRQIA
IKALSTLQQRVAGIEDPEEILHRFAKPVV
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggtcgcaacctccctcgctccgcgtaacattcagcgtcacaatcatttagtggcgatc
ccggtcggccacactccggttgaggccgatcttcggcagcgggcggagaccctgctgcag
cagaaaatcgcctatgtggatcaggagtggttccgacacccggacgcggagacgcgtatc
gcggcactggagcccgacgcaggcagtggttcgagccgggtcaccagtccggttgcggga
attgcattcgtctccggcctggtagcggagtcgccgttgaccggtccggaagagaaattt
ctctttacgcggatgaacttcctccgttttcgagccgccgtcgggcagcaaagtctgaaa
ccacgccggccatcggctcggcaagtcgcgcagatcgaagccgacctcgccgaggccaac
gaacttcggaatcgcatcgtgcaggccaatctgcgactggttgtttccgtggcccgcaaa
ctcgccggttcgctggaccagctctcggaactgatcagcgaagggctgctgccgatgatc
cgggcggtggagctgttcaacattcagctcggcaaccggttcagcacctacgccacctgg
gcggtgcggaatcagatgctgcggtcgctgaagaagcggaagaatgcccacgagtttaat
gtcacggaggacgagatctcgctgtcgcagatcgccgatccgcgaacggacctgatcgac
gcaagttcgccaaagtcggacagcgaaccgctgatcggtcgcatgctggcgcaattgccg
gagcgggaacggcagatcctggcggcgcgattcggactgaacggaaacccggagggacag
agcctggcggaactgtccgagcagttcggactcagcaaagaacgcgtgcgtcagattgcg
atcaaggcgctgagcaccctgcagcagcgggtggctggaattgaggatccggaagaaatc
ctccatcgattcgcgaagccggtcgtttag
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