Planctellipticum variicoloris: SH412_000141
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Entry
SH412_000141 CDS
T09866
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pvar
Planctellipticum variicoloris
Pathway
pvar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SH412_000141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvar03019
]
SH412_000141
Enzymes [BR:
pvar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SH412_000141
Messenger RNA biogenesis [BR:
pvar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SH412_000141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WLD10080
LinkDB
All DBs
Position
complement(183174..184625)
Genome browser
AA seq
483 aa
AA seq
DB search
MTFLELGLAEPIVRATTAEGYTTATPIQEQAIPHVLRGSDVLGCAQTGTGKTAAFALPIL
NNLMLSTAPQTGPAHRQPPRRPRALILSPTRELASQIDESLHAYGRHTGLRGTVIYGGVS
QNPQAQSIRRGVDIIVATPGRLLDLMNQRLVDLSTIEIFVLDEADRMLDMGFMPDLQRII
ATLPAQRQNLLFSATMPGPIAKLAHDILVNPARIDIAPVQETTELIEQSVCFVPGGQKTR
LLTRYLGEPATKRSIVFTRTKHGADRVVRQLEEAGVVAEAIHGNKSQAARQRTLIAFKAN
RVQVLVATDLAARGIDVDGVSHVFNYDLPREPETYTHRIGRTGRAGQTGIAIAFCSADER
SMLRAIERQLGYKLRVEVTPFSVDPAEEVRAPRPQQSNFKPRRPQGQGQQGGPPARPRKP
QGEQQSQQQPAKPRPPRPAAAQGEGGHHVHGEHGAGGYRRPTGKPAARKFVGAGRGRPAN
GDR
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttctggaactggggctcgctgagcccatcgtccgcgctaccactgcagaaggc
tacacgaccgcgacccccattcaagaacaggccatcccccacgtgctgcgtgggtccgat
gtgctgggttgcgctcagaccggcaccggcaagaccgccgcgtttgccttgccgattctc
aacaatctcatgctgtcgaccgcgccgcagaccggcccggctcaccggcagccaccgcgc
cgaccgcgggcgctgattctgtcgccgacccgcgagctcgcttcgcagatcgacgaaagt
ctgcacgcttacggtcgccacacgggacttcgcggcacggtcatttatggcggggtcagc
cagaatccgcaggctcagagcatccgtcgcggggtcgacatcatcgtcgccactccgggc
cggctgctggacctgatgaatcagcgactcgtggacctgtcgaccattgaaatcttcgtc
ctcgacgaagccgaccgcatgctggatatgggtttcatgcccgacctgcagcggatcatc
gccactctgccggcgcagcgtcagaacctgctcttctcggcgacgatgcccggcccgatt
gcaaaactggcccacgacattctcgtgaacccggctcggatcgatatcgctccggtccag
gaaaccaccgaactgattgaacagtcggtctgctttgtccccggcggtcagaagacgcgt
ctgctgacccgttatctgggcgagccggccacgaagcgatcgatcgtcttcacccggacc
aagcatggcgccgaccgcgtcgtgcggcagctcgaagaagcgggcgtcgtcgctgaagcg
atccacggcaacaagagccaggccgcccgccagcggacgctgattgcgttcaaggccaat
cgcgtccaggtactggtcgcgacagacctcgccgcccgcggcatcgacgtcgacggcgtc
tcgcacgtcttcaactacgatcttccgcgcgagccggaaacctacacgcaccggatcgga
cgaacgggccgggccggtcagaccgggattgcgattgcgttctgcagtgcggacgagcgt
tccatgctgcgggcgatcgagcgtcagctcggttacaagctccgggttgaagtgacgccg
ttctcggttgatcctgcggaagaagttcgcgcgccgcgtccgcagcagtcgaatttcaag
ccgcgtcggccgcaggggcagggacagcagggagggccgccggcccgtccgcggaagcca
cagggcgagcagcagtctcagcagcagccggccaagccgcgtccgccgcggcccgcagcc
gctcagggcgaaggcggccatcatgtgcatggcgaacatggggccgggggataccgccgt
ccgacgggtaagccagccgcccggaagttcgtgggggccggtcgcggccgtcctgccaac
ggcgatcgttaa
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