Planctellipticum variicoloris: SH412_000142
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Entry
SH412_000142 CDS
T09866
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
pvar
Planctellipticum variicoloris
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvar03019
]
SH412_000142
Messenger RNA biogenesis [BR:
pvar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SH412_000142
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
TraI_2
Ppx-GppA_III
tRNA_anti-codon
LPD23
Motif
Other DBs
NCBI-ProteinID:
WLD10081
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All DBs
Position
complement(184971..186017)
Genome browser
AA seq
348 aa
AA seq
DB search
MPPRSAASRVAEPEPRVLKLCELEPGQTGDCFVLLSGKESAKTRDGKPFYRAAFRDLRRS
VTSMIWSDGGWFEDCDQRWLVGGFYKVRGRYFENQFGPQFELEKIRPIEEADRSAGFDPG
DFHPSSRFDPDQMLSDLRQLAEEHISELPLRRLVARILDDRADQLREMAAASHHHHAFRG
GFLEHVLSVTRTAVYLADKYRDQYPRLEPPLSKSLVVAGAILHDIGKTIELQQRPGGAEY
TAAGRLIGHIVLGRDLVREAAAHDADFDPEILLRLEHIILAHQAVPEWGSPVSPSTPEAL
LVYYADDIDAKFHMVVMALESERTPGNEEFTNRDNPLKRRIFRGFVTT
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgccgccccgatccgctgcgtcccgagtcgcggagcccgaaccccgggttctgaaactg
tgcgaacttgagcccggccagaccggcgactgtttcgtgctgctgtccggcaaggagtcc
gcgaagactcgcgacggcaagccgttctatcgggccgcgttccgcgacctgcgccggtcg
gtcacgtcgatgatctggagcgacggaggctggtttgaggactgcgaccagcgctggctg
gtcggggggttctacaaagttcgcggtcggtacttcgagaaccagttcggtccgcagttc
gagctggagaagatccgtccgattgaggaggccgaccggtcggccggcttcgatccggga
gatttccaccccagttcccgtttcgatccggaccagatgctgtcggacctccggcagctt
gcagaagagcacatcagcgagctcccgctccgccggctggtcgccagaattctggacgat
cgcgccgaccagctccgcgagatggccgccgcgagccatcatcaccatgcgtttcggggg
ggatttctggaacatgtgctctcggtcacccggacagcggtttatcttgccgacaagtac
cgcgaccagtatccgcgcctcgagccgccgctgtcgaagtcgctcgtcgtcgccggggcg
atactgcacgacatcggcaagacgatcgaactgcagcagcgaccggggggggccgagtac
accgccgcggggcggctgatcggtcacatcgtgctggggcgcgatctggtgcgggaggcc
gctgcgcacgacgcagactttgaccccgagatcctgttgcggctggagcatatcattctg
gcgcaccaggcggttccggaatgggggagtccggtcagcccgagtacgcctgaagcgttg
ctggtgtactatgccgacgatattgacgccaaatttcacatggtggtgatggccctggaa
tccgaacggacgcccgggaacgaagagttcaccaatcgggacaatccgctcaaacggcgt
atcttccgcgggttcgtgaccacttga
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