Planctellipticum variicoloris: SH412_000235
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Entry
SH412_000235 CDS
T09866
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pvar
Planctellipticum variicoloris
Pathway
pvar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SH412_000235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvar03019
]
SH412_000235
03009 Ribosome biogenesis [BR:
pvar03009
]
SH412_000235
Enzymes [BR:
pvar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SH412_000235
Messenger RNA biogenesis [BR:
pvar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SH412_000235
Ribosome biogenesis [BR:
pvar03009
]
Prokaryotic type
rRNA processing factors
SH412_000235
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WLD10172
LinkDB
All DBs
Position
complement(297849..299468)
Genome browser
AA seq
539 aa
AA seq
DB search
MTNEMLMNVLQPEESRIAIVEDGVLEELYVERNSLENYVGNIYKGRVVNLEPSIQAAFVD
FGVGRNGFLHVSDVEYQYYKHLVDGKPDEFDDDDEDEEEERPPRRGAPRGRANERNARSK
PPIQEIFKRGSEVLVQVIKEGIGSKGPTLSTYISIPGRYLVLMPGLQRVGVSRKIADDVT
RRKLRQALTELNPPPGLGFIIRTAGIDRSQKDLQRDLNYLLRLWSLIVGRIKKFPAPVDI
YEESDMIIRTIRDIYTGDIDSILIDEPRAYERAREFMKIVLPRHVDRIQLFDGREPLFNK
YGIEDEIARIQNRHVPLKGGGSIVIDQTEALVAIDVNSGNYRADENAEENAYQVNLRAAE
EISRQIRLRDLGGVIVNDFIDMRDERHRRGVERALMNAVRRDRARTKIMRISPFGLIEMT
RQRIRPSLRRSVYEDCPCCHGTGQVKTGESMAIEVMRLLMTHSNHPDVVKVNVEVHDRVA
AFLNNRKRRDIMQLEESYDVTISINALPNAAPEHLKFHCTNELGNEIKIPMREDSKSRR
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacgaaatgctgatgaatgtcctccagccggaggagagccggatcgccatcgtt
gaagacggcgttctggaagagctttacgtcgagcgaaacagtctcgaaaactacgtcggg
aacatctacaaaggccgcgtcgtcaacctggagcccagcatccaggccgcgttcgtcgac
ttcggcgttggccgcaacggcttcctccacgtcagcgacgtcgagtaccagtactacaag
cacctcgtcgacggcaaaccggacgagttcgacgacgacgatgaggacgaggaagaagag
cgtccgccccgtcgcggagcgccgcgcggccgcgccaacgagcgcaacgcccgcagcaag
ccgccgattcaagagatcttcaaacgcggcagcgaagtcctggtgcaggtcatcaaggaa
gggatcggcagcaaagggccgaccctctcgacctacatcagcatcccgggccgctatctg
gtcctgatgcccggcctgcagcgcgtcggcgtgagccgcaaaattgccgacgacgtgacc
cgccgcaagctgcgccaggcgctgacggagctgaacccgccgcctggtctgggattcatc
attcggacggcggggatcgatcgttcgcagaaagacctgcagcgggatctcaactacttg
ctgcggctgtggtcgctgatcgtcggccggatcaagaagttcccggcgccggtcgacatc
tacgaagaaagcgacatgatcattcggacgatccgggacatctacaccggtgacatcgac
tcgatcctgatcgacgagccgcgggcctacgagcgagcccgcgagttcatgaagatcgtg
ctgccgcgccacgtcgaccggattcaactgttcgacggacgcgagccactcttcaacaag
tacggcatcgaggacgagatcgcccgcatccagaaccggcacgtgccgctgaagggtggc
ggatcgatcgtcatcgaccagactgaagccctcgtcgccatcgacgtcaacagcggcaac
taccgcgccgacgaaaacgccgaggagaacgcctaccaggtcaacctgcgggcggccgag
gagatcagccggcagatccgcctgcgggatctgggcggcgtgatcgtcaacgacttcatc
gacatgcgcgacgagcgacatcgtcgcggcgtcgagcgggcgctgatgaacgccgtccgc
cgggaccgggcccggacgaagatcatgcggatcagcccgttcgggctgatcgagatgacc
cgtcagcggatccggccgtcgctccgccgaagcgtctacgaggactgcccctgctgtcac
gggacgggccaggtcaagaccggcgagagcatggcgatcgaggtcatgcggctgctgatg
acccactccaaccacccggacgtggtgaaagtgaatgtggaagtccacgatcgcgtcgcg
gcgttcctgaacaaccggaagcggcgggacatcatgcagctcgaagagtcgtatgacgtg
acgatcagcatcaacgccctcccgaacgccgcgccggaacacctcaagttccattgcacc
aatgagttggggaacgagattaaaattccgatgcgggaagactcgaaatcccgccggtaa
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