Planctellipticum variicoloris: SH412_000358
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Entry
SH412_000358 CDS
T09866
Name
(GenBank) mechanosensitive ion channel
KO
K22051
miniconductance mechanosensitive channel
Organism
pvar
Planctellipticum variicoloris
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvar02000
]
SH412_000358
Transporters [BR:
pvar02000
]
Other transporters
Pores ion channels [TC:
1
]
SH412_000358
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MscS_TM
MS_channel_2nd
MscS_porin
MS_channel_3rd
MS_channel_1st
CDC48_2
Motif
Other DBs
NCBI-ProteinID:
WLD10292
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All DBs
Position
454531..458034
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AA seq
1167 aa
AA seq
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MSCAAQKCLLWAAFFVTSVAPVGDAAAQPPAIGGRGTRAEPTLASQISGRLKQLEADSKL
DADLKKQLVDRYTTAQASLDDAAAADRKAAGFRDQLNRSAATLKQVQERLQKLPRQASAN
VDATVGSADLQRMITSVQTKINQPDTGLQSQARSTDEQATGRVKRLQEIPAQITDLAAAL
DMNQKELDGSPPDNEPKELTEARRMSLQAQRTMLERQRSALQSELAWLEPAETNDLLRDQ
RDLAQRELALAQDEVKLLQGELDRRRQREAQEKVEAAQREAALAHPLLKPIADETQQLAE
EDHALAERLRKVADDLQQAQSQFDSLQAESSRTREMVKEVGLTESIGLMLRSQRANIANP
RELKERIRQRGDTIRDIRLKLFELNAKIDELSDVESALPKALAKQNADAPSLPGKTLIAE
GETLLKHQREILTGLSNNYSKYIEQLTSLDTLERKLMSSAEEYGGFIDERAFWIRTSGWY
GWSEARSAAGAAAEFLNAERWGELGDSIVRDFHREPVGWTVFGLFMAVWLMLRRRIRRTL
HDVGDQAAEGSCRRFGPTLQAILLTLLLAAGPIGLLWFPGIRLESQVSGLAWTQAVGQGL
LQAALVGTPFLVLQSICTRRGLAEQHLSWNVRNLRNINHQLRWFIPVGLALACLLGALNA
RADEPPVESLGRLVFMLLMVLLTLFCRAVLSGPHAVPSTDSNHPWAVRGWAWARTISLLV
PTVLLVLVWAGYFYTAGQLAQRLQATAWLWFGLLTLRSIIMRWITLQRRRLALQQAQQLR
AQAESELKQTQESSETGFSLARFDLGGIVGQILRLLNTSLVVVWLIGIWLIWAEVVPALG
ILNRVNLWQTAQQQTIVRDVEQVAGTSDTEQAQQTQETVIRLRWVTAADVLTAVVVLAIA
IVAGRNIPGLLEISVLSRLPLDAGIRFAAILLGRYAIFIVGAVAAFGQIGVGWSNVQWLV
AAASVGLGFGLQEIFANFVSGVILLMERPIRVGDVVTVGDVTGTVLQIRIRSTTIRDWDQ
KEFIVPNKQLITDSLLNWTLSNTVSRLVIEVGVSYSSDPRKVQELLLQIAIEQPSVMRDP
APQVAFMQFGDSSLKYVLYCFVPSLSNRLPTTDALNTQIIERFRAAGIEIPFPQRDLYVR
SISGIGATPVPPTPDDAPPNAELRAPD
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtcatgcgctgcgcagaagtgtttgctctgggcggcgttcttcgtaacgagcgtggcg
ccggtcggcgatgctgcggcgcagccgccggctatcggagggcgcgggacccgcgctgag
ccgacgctggcgtcgcagatttccggccgcctcaagcaactggaggccgactccaaactc
gacgcggatctgaaaaagcagctcgtcgatcgctacaccaccgctcaggcatcgctggac
gacgctgcggccgcggatcggaaggcggcggggttccgggatcagctcaaccgctcggcg
gcgacgctcaagcaggtccaggaaaggcttcagaagcttcccaggcaggcctctgccaat
gtcgacgcgaccgtcggcagcgccgatctgcagcggatgattacttcagtccagacgaag
atcaatcagccggacaccggactgcagtcgcaggccaggtcgaccgacgaacaggcgacg
gggcgggtcaagcgactgcaggagattcctgcccagattaccgatctcgccgccgccctc
gacatgaatcagaaggaactggatggttcgcctcccgacaatgagccgaaggagctgacc
gaggcccgacgcatgtcgctgcaggcgcagcggacaatgctggaacggcaacggtcggcg
ctgcagtccgagctggcctggctcgagcctgcggaaaccaatgatttgctgcgggaccag
cgcgacctggctcagcgggagctggccctcgcgcaggatgaagtgaagctcctgcaggga
gagctggaccggcggcggcagagggaggcgcaggaaaaagtcgaagcggcccagcgggag
gccgccctcgcgcacccgctgctgaagccgatcgccgacgaaacccagcagctcgccgaa
gaagaccatgcgctcgccgagcgattgcgcaaagtggcggacgacctgcagcaggctcag
tcgcagttcgacagtctgcaggccgagtccagccggacgcgcgagatggtcaaagaagtc
ggcctgaccgagtcgattggcctgatgctccgcagccagagggcgaacatcgccaatcct
cgggagctgaaggaacggatccggcagcgcggcgacacgatccgcgacattcgcctgaag
ctgtttgagctgaacgccaagatcgacgagctgtccgacgttgaatccgcgctccccaag
gccctggccaagcagaatgcggacgcccccagcctgcccggaaaaacgctgattgccgaa
ggggaaaccctgctgaagcatcaacgggagattctgaccgggctcagcaacaactacagc
aagtacatcgagcaactcaccagcctcgatacgctcgaacgcaagctgatgagctccgct
gaggaatacggcggcttcattgatgagcgggcgttctggatacgcaccagcggctggtat
gggtggagcgaagcccggtccgcggcgggcgccgccgcagaattcctcaacgcggaacgc
tggggggaactcggcgactcgatcgtccgcgacttccatcgcgaacccgtcggctggacg
gtgttcgggctgttcatggcggtctggctgatgttgcgccgtcggatccgtcggacgctg
cacgacgtcggcgatcaggcggccgagggctcgtgccgccggtttgggccaacattgcag
gcgatcctgctgacattgctgctggcggcagggccgatcggcctgctgtggttccccggc
atccgacttgagtcgcaggtctccggattggcctggacgcaggcggtcgggcaaggtctg
ctgcaggcggctctcgtcggaacgccatttctggtgctgcaatccatctgcacccggcgg
gggcttgccgagcagcacctgtcgtggaacgtccgcaacttgcggaacatcaaccaccag
ttgcgctggttcattccggtgggcctcgcgctcgcgtgcctgctgggcgccctgaatgcc
cgcgcggacgagccccccgtggaatccctgggccggctggttttcatgctcctgatggtg
ttgctgacgttgttctgccgggccgtcctgtcgggtccccacgccgttccgtcgaccgac
tccaatcacccctgggcggtgcgaggctgggcctgggcgcggacgatcagcctgctggtg
cccacggtcctgctcgtcctggtgtgggccggctatttctacaccgccgggcaactggcg
caacgacttcaggcaaccgcctggctgtggttcggcctgctgaccctgcgctcgatcatc
atgcggtggatcacgctgcagcgaaggcgactcgcccttcagcaggctcagcagcttcgc
gcgcaggcggaatcggaactgaagcagactcaggaatcgtccgaaaccggattttcgctg
gcacggttcgatctcggcggcatcgtcggtcagattctccggctgttgaatacaagtctc
gtggtggtctggctcatcgggatctggctgatctgggcggaggtcgttcccgcgctcggc
attctgaatcgggtcaacctctggcagacggcgcagcagcagacgattgttcgagatgtc
gagcaggtcgcggggacttcggataccgaacaggcgcagcagacgcaggagactgtcatc
cgcctgcgctgggtcacggcggcggatgtcctgactgccgttgtcgtgctggcgatcgcc
atcgtcgccggccgaaatattccgggtctgctggagatctcggtcctcagccgactgccg
ctcgacgccggtatccggtttgccgcaattctgctcggccggtacgccattttcattgtg
ggggccgtcgccgcattcggccagatcggcgtcggctggtccaatgtccaatggctggtc
gcggccgcttcggttggtctcggcttcggcctgcaggagatcttcgccaacttcgtttcg
ggcgtcatcctgctcatggagcgtccgattcgcgtcggagacgtggtgaccgttggcgac
gtgacggggacggtcctgcagatccgcatccgctcgacgacgattcgcgactgggaccag
aaagagttcattgttccgaacaagcaattgattacggacagcctgctcaactggactctg
tccaacacggtgagccggctcgtcattgaagtcggcgtctcgtactcgtccgatccgcgc
aaagtccaggagttgctgctgcaaattgcgatcgaacagccctccgtcatgcgggacccc
gctccccaggtcgcgttcatgcagttcggcgacagttctctgaagtatgtcctgtattgc
ttcgtccccagtctgagcaaccgcctgccgacaaccgatgccttgaacacccagatcatc
gaacgattccgtgccgccggcatcgagattccgttcccgcagcgcgacttgtacgttcgg
agtatttccggaatcggcgccacgcctgtcccgccgactcccgatgatgcgccaccgaac
gctgaacttcgagctcccgactga
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