Planctoellipticum variicoloris: SH412_000478
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Entry
SH412_000478 CDS
T09866
Name
(GenBank) S1 RNA-binding domain-containing protein
KO
K02945
small subunit ribosomal protein S1
K03527
4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:
1.17.7.4
]
Organism
pvar
Planctoellipticum variicoloris
Pathway
pvar00900
Terpenoid backbone biosynthesis
pvar01100
Metabolic pathways
pvar01110
Biosynthesis of secondary metabolites
pvar03010
Ribosome
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
SH412_000478
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
SH412_000478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
pvar03011
]
SH412_000478
Enzymes [BR:
pvar01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.7 With an iron-sulfur protein as acceptor
1.17.7.4 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
SH412_000478
Ribosome [BR:
pvar03011
]
Ribosomal proteins
Mitochondria/ Chloroplast
Small subunit
SH412_000478
Bacteria
SH412_000478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
S1_2
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
WLD10410
LinkDB
All DBs
Position
614684..616354
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AA seq
556 aa
AA seq
DB search
MNGEQAVPSDETLSSEPQSSPEAIAPAAETAPVVEAAAPAAPALEASPGPESSAPAEGEP
VAAAPAEDEEVPKRKVQLNPTQENAPRPVAMFAGTTPAAPPPADAAGAAISDAADAMSSM
PMSATVASGPVALPEEKVELEASLEAELEAAMAGELSAPVPVVPEPGTAGDRDAVPLPQS
EDQLEPGTRLKAKVQSVTAEDVFCEVGFRVPGVLPLRQFPSGKHPSVGEEFLVHVEKFDP
ENGVILVNLPKTTRRPKGNWEDLAVGQIVECLANRTNKGGLEVTISNLRGFLPASQVDVG
FVSSLDAYVGQKLTVLITEVNPAKRNLVVSRRAIVIAERKELAQGFWEKVEVGQQLPGRV
KTIKDYGAFIDLGGVDGFLHVGEMSWTRIKHPSEAVQEGQQVDVVILSLDREKEKIGLGM
RQLAQNPWVSAVDKYPVGRTVTGKVSRATDFGAFIELEPGVEGLVHISELDHRRVKKVTD
VLTVGQDVQVQVLEVAPDRQRISLSLKALKEKPESEKPKEEEPVVPYERKRKEPLRGGTG
GNGGGGLFGNPTDFGR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcgaacaggcggtgccgtccgacgagaccctttcctccgagccccagtcctct
ccggaagccattgcgcccgctgcggaaacagctcccgttgtggaagcagcggccccggcc
gctcccgctttggaagcttctccgggacccgaatcttcggcccccgccgaaggcgaaccg
gtcgccgcggctcctgcggaagacgaagaagtcccgaaacgcaaggttcagctcaacccc
actcaagaaaacgcaccccgcccggtggcaatgtttgcgggcacgacccccgcagcgcct
cccccggccgacgccgccggagcggcaatctctgacgctgcggacgcgatgtcctccatg
ccgatgtcggcgacggtggcctccggccccgtcgccctgcccgaggaaaaggtcgagctg
gaagcgtcgctggaggccgaacttgaggctgccatggccggcgaactttcggctcccgtt
cccgtcgtccccgagcccggaacagccggcgatcgagacgctgtcccgctgccccagtcg
gaagaccagctcgaaccgggaacgcgcctcaaggcgaaggtccagagcgtcaccgccgag
gatgttttctgcgaggtcggcttccgcgtcccgggagtgctgcccctgcggcagtttccc
agcgggaagcatcccagcgtcggcgaggagttcctcgtccacgtcgagaagttcgacccg
gaaaacggcgtcatcctggtcaacctgcccaagaccacccgtcgtccgaaggggaactgg
gaagacctggccgtcggccagatcgtcgagtgcctcgccaaccgcaccaacaagggcggc
ctcgaagtcaccatcagcaacctccgcgggttcctgccggccagccaggtcgacgtcggc
ttcgtgtcgtcgctggatgcctatgtcgggcagaagctcaccgtcctcatcaccgaggtc
aaccccgccaagcggaacctcgtcgtcagccgccgggcgatcgtcatcgccgagcgaaaa
gagctggcccagggattctgggagaaggtggaagtcggacaacagcttccgggccgcgtg
aaaacgatcaaggactacggcgcgttcatcgacctcggcggcgtggatggatttctgcac
gtcggcgagatgagctggacccggatcaagcatccgtccgaagccgtacaggaggggcag
caggtcgacgtggtgatcctctccctcgaccgcgagaaggagaagatcggcctcggcatg
cggcagcttgcccagaacccctgggtcagcgccgtcgacaagtaccccgtcgggcggacg
gtgaccggcaaggtctcccgcgcgaccgatttcggggctttcatcgagctcgaaccggga
gtcgaaggtctggttcacatcagcgaactggaccaccggcgggtcaagaaggtgacggac
gtgctgaccgtgggccaggacgtgcaggtgcaggtgctcgaagtggctccggaccggcag
cggatcagcctgtcgctcaaggcgctcaaagagaagccggagagcgagaagccgaaagaa
gaagagccggtcgtgccgtacgaacggaagcggaaagagccgctccggggcggaacgggc
ggaaacggcggcgggggtctgttcggcaatccgacggacttcggccgataa
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