Planctellipticum variicoloris: SH412_001022
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Entry
SH412_001022 CDS
T09866
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pvar
Planctellipticum variicoloris
Pathway
pvar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SH412_001022 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvar03019
]
SH412_001022 (recQ)
03400 DNA repair and recombination proteins [BR:
pvar03400
]
SH412_001022 (recQ)
Enzymes [BR:
pvar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SH412_001022 (recQ)
Messenger RNA biogenesis [BR:
pvar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SH412_001022 (recQ)
DNA repair and recombination proteins [BR:
pvar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SH412_001022 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
HTH_23
ResIII
Motif
Other DBs
NCBI-ProteinID:
WLD10938
LinkDB
All DBs
Position
complement(1292525..1294720)
Genome browser
AA seq
731 aa
AA seq
DB search
MPTADALDSALDVLRQYWGYDELRPFQREAVAAGLNGRDSLVVLPTGGGKSLCYQLPAVC
QEGLAIVVSPLIALMKDQVDSLRECGIPAAAVHSALPPAERREIADDIRANRLKLLYVAP
ERLCTERMLDFLAECPVSFIAIDEAHCISNWGHDFRPEYRLLGQLRDRFPGVALHAYTAT
ATEAVRRDIASQLNLRDPDVIVGLFDRPNLNYRVVPRGDLWKQVTDVVERYRGESGVIYS
ISRREVDELAERLKRAGYRAVPYHAGLSDVDRHRHQDAFLNDKADIVVATVAFGMGIDKT
NVRYVIHTAAPKSVESYQQESGRAGRDGLPSDCCLFFGTRDFVTWRKMQDQLTGQAAEQA
LVNLREIERFCTGATCRHRTLVEYFGQTYEGQNCGACDICTDPTALLDDALIVGQKILSC
VIRVKEGFGADYVAQVLTGSKDQRILANGHDQLSTYNLLGNCRKAEVRQWIDQLAGQGFL
EPTGEFRVLCVTPAGRQLLKGETTPRLSKRSQAAPAKASGSRRAAVADFDVALFERLRTL
RRELAEARGVPPFVVFGDVTLQDLARRKPRSLEEFLETYGVGEKKCNEYGEIFLKAIADG
EDSAPAAPAVRGPESPGDVKPPSSSQLAADELFRAGRSIAEAAATLGRAESTTRQYLVDF
LERDGRCDPEPWVSPEIFTQVDGAARELGDFRLKPIFDHLGGAVSYDQLHVAVACLRNAL
KSATSGNTMGE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgccgacggctgatgccctcgattccgccctcgacgtgctccggcagtactggggttac
gacgaactgcggccctttcagcgggaagcggtcgccgcaggtctgaacggtcgcgattcg
ctcgtcgtcctgccgacggggggcgggaaatcgctctgctatcagctccccgcggtctgc
caggaagggctggcgattgtcgtctcgccgctgatcgccctgatgaaggatcaggtcgac
agtctccgggaatgcggcattcccgccgcagccgtccacagcgcactcccgcccgccgaa
cgccgcgagatcgccgacgacatccgggccaatcggctcaaactgctctacgtcgctccc
gagcggctctgcaccgagcggatgctcgactttctggcggaatgtccggtctcgttcatt
gcgatcgacgaagcccactgcatcagcaactggggtcacgacttccgcccggaataccgc
ctgctgggccagttgcgcgaccgttttccgggcgtcgcattgcacgcatacacggccacc
gcgacggaagccgttcgacgggatatcgcgagtcagctcaacctccgcgatcccgatgtc
atcgtcgggctcttcgatcgcccgaatctcaactaccgtgtcgttccccgcggcgatctc
tggaagcaggtgaccgatgtcgtcgagcgttaccgcggcgagtcgggggtgatctacagc
atctcccgccgggaagtcgacgaactggccgagcgcctcaagcgggccggctaccgggcc
gtcccctaccatgccgggttgtcggacgtcgaccgtcaccgccatcaggatgcgttcctc
aatgacaaggcggacatcgtcgtggccaccgtggccttcgggatggggatcgacaagacc
aacgtccgctacgtgatccacaccgcggctcccaagtcggtcgagagctatcagcaggag
tcgggccgagccggtcgcgacggcctgccctccgactgctgcctgttcttcgggacgcgg
gacttcgtcacctggcgcaagatgcaggatcagttgaccggccaggcggccgagcaggcc
ctcgtcaatctccgggaaatcgaacgcttctgcaccggcgccacgtgccggcatcgcaca
ctggtcgagtatttcggtcagacgtatgagggccaaaactgcggggcctgcgacatctgc
accgatccgacggccctgctcgacgacgccctgatcgtcggccagaagatactctcgtgc
gtgatccgcgtgaaagaaggcttcggagccgactatgtggctcaggttctgaccgggtcc
aaggaccagcggattctggccaacgggcacgaccagctcagcacgtacaatctgctggga
aactgccgcaaggcggaggtccgccagtggatcgaccagctcgccggccaggggtttctg
gaaccgaccggcgaattccgggtcctgtgcgtcacgccagccggccggcagcttctgaag
ggggaaacgactccccggttgtcaaaacgcagccaggcggcgccggcgaaagccagcggt
tcccgccgggctgccgtcgccgacttcgacgtggccctgttcgagcgtctgcggacactc
cgccgcgaactggccgaggcccgcggcgtgccgccgtttgtcgtgttcggcgatgtgacg
ctgcaggatctggcccggcggaagccccgttcactcgaggaattcctcgaaacctatggc
gtcggcgagaagaaatgcaacgaatacggcgagatcttcctgaaggccatcgccgacggc
gaggactccgcacctgcggctcccgcggttcgtgggccggagagccccggcgacgtcaaa
ccgcccagctcgtctcagctcgccgctgacgagctgtttcgagcgggccgttcgatcgcc
gaggcggcggccacgctgggccgggcggaatcgacgacccgccagtacctggtcgacttc
ctggaacgggacggtcgctgcgatcctgagccgtgggtttccccggagattttcacccag
gtcgacggcgcggcccgggaactgggagatttccgtttgaagccgatcttcgaccatctc
ggcggagccgtctcgtacgatcagctccacgtggcggtcgcctgcctgcgcaatgcgctg
aagtctgcgacctccggcaacactatgggcgagtaa
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