Planctellipticum variicoloris: SH412_002321
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Entry
SH412_002321 CDS
T09866
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pvar
Planctellipticum variicoloris
Pathway
pvar03030
DNA replication
pvar03430
Mismatch repair
pvar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SH412_002321 (dnaE)
03430 Mismatch repair
SH412_002321 (dnaE)
03440 Homologous recombination
SH412_002321 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvar03032
]
SH412_002321 (dnaE)
03400 DNA repair and recombination proteins [BR:
pvar03400
]
SH412_002321 (dnaE)
Enzymes [BR:
pvar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SH412_002321 (dnaE)
DNA replication proteins [BR:
pvar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SH412_002321 (dnaE)
DNA repair and recombination proteins [BR:
pvar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SH412_002321 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DUF655
Motif
Other DBs
NCBI-ProteinID:
WLD12190
LinkDB
All DBs
Position
complement(3000889..3004437)
Genome browser
AA seq
1182 aa
AA seq
DB search
MTDARPFAHLHCHTHFSLLDGATRISDSDREDLVKKVKGSGMNSVAITDHGNLYGSLEFY
NACKGSGLNPIIGLEAYIAPGSRFDKKGASKVKEASYHLTLLAMNLTGFRNLITMSSKSF
LEGFYYKPRIDKELLAGHSEGIICLSGCAAGELSHYLLADDWEAAEKLTKWYVDVFGDRF
YMEIQNAGFQIQKECMDRTVDLANRMGLPLVATNDAHYLNREDAAVQDVLLCVNTKSERS
DLNRMRMDSDQLFVRTPDEMYAAFPGFEDAVARSQEIADRVDIKLGKERYYPVFQCPDEL
SDVDYLRLLCEKGMEWRYGKENITDEHRARLDRELGVIQKMGYPSYFLIVWDFVRFAMDQ
GIPCSARGSACGALVAYVLGLSHVCPLQYDLLFERFLDESRTEPPDIDIDFCRDRRQAVI
DYTKQKYGEANVSQIGTFGTLKAKAAIRDVGRALSIPLPRVDAVAKMIPEELNIELKEAL
EKSAELKEQYEGDPQIRELLDMAIQLEGLARSAGTHAAGVVVADRPIGDYVPLQTISGKT
DVVTQWDGPTVEKAGFLKMDFLGLRNLTILDKAVINVRKHRGVEIDPVKLPIDDKETFAL
LQRGETKGIFQLESGGMRDLLTKMKPDSFLDIIATSALYRPGPLEGGMVMTYVDVKHGRQ
PLPRVHPIMDSILDETYGVMVYQEQVMRILNRLGGIELSQSYQCIKAISKKKLETIAKYR
AQFLEGSAANGLAEQTAIELFGMIEKFAGYGFNKSHSTAYGAVAYQTAYLKAHYPAEFMA
ALLSCEMEDTDRISEHVDDCRRMKIEILPPDINHSEVEFGVLGDKLTFGLGALKGVGEAA
LHAIVEERTANGPFTSIFDLAERIDPKALNKSVLELLVKAGALDCLGGRRSQLITVVERA
VQASQSRHKDKARGQKNLFGGDDDEATPEEAAAAVMTALPDVPEWSQREKLQYEKETLGF
YLTSHPLTELADQLRSYATHAARELVELDDGSEVVLGGMISAIKKATTKKPSRNGHSKYV
NFDFEDPSGVVRCIMWPEDFARLGEKVEQDAVRFLKGKVDKRSREPNVVVDSMWTLEEVE
RDFTRQVAIKFQKGVHDTRVVNRVRDILNKHPGRTEVVLFVDTAEDAQPSARIRFIAQKP
LEQKVSCTRELRTELSDALGDGNLKFMAEPRTASRSGGSVGR
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgacggacgcgcgtcccttcgcccacctccactgccatacgcacttcagcctgctcgac
ggggcgacgcgcatctcagacagcgatcgcgaagacctcgtcaagaaggtcaaagggtcg
gggatgaactccgtggcgatcaccgaccacggcaacctgtacggctcgctggagttctac
aacgcctgcaaggggagcgggctgaacccgatcatcgggctggaggcctacatcgcgccc
ggttcccggttcgacaaaaagggggccagcaaggtcaaggaggccagctatcacctgacg
ctgctggcgatgaatctgaccgggttccgcaacctgatcacgatgtcgtccaagtccttc
ctcgaaggcttctactacaagccccgcatcgacaaggagctgctcgccggtcacagcgag
gggatcatctgcctgtcgggctgcgcggcgggcgagctgtcgcactacctgctcgccgac
gactgggaggccgccgagaagctgacgaagtggtacgtcgacgtcttcggcgaccgcttt
tacatggagatccagaacgccggctttcagattcagaaggagtgcatggaccggacggtc
gacctggccaaccggatgggactcccgctggtcgcgaccaacgacgcccactacctgaac
cgggaagacgcggcggtgcaggacgtgctgctgtgcgtgaacaccaagtccgaacggagc
gacctgaaccgcatgcggatggacagcgatcagctcttcgtccgcacccccgacgaaatg
tacgcggcgtttccgggcttcgaagacgcggtcgcccggtcgcaggagatcgccgaccgg
gtcgacatcaagctcggcaaggaacggtactacccggtcttccagtgcccggacgagctg
agcgacgtcgattacctgcggctcctctgcgaaaaggggatggagtggcggtacggcaag
gaaaacatcactgacgaacaccgcgcccggctcgaccgcgaactcggcgtcatccagaaa
atgggttaccccagctacttcttgatcgtctgggacttcgtccgcttcgcgatggatcag
ggcattccctgcagcgcgcgcggttcggcgtgcggggcgctggtggcctacgtgctgggg
ctcagccacgtctgcccgctgcagtacgacctgctgttcgagcgatttctcgacgaaagc
cggacggaaccccccgatatcgatatcgacttctgccgcgatcgccggcaggcggtcatc
gactacaccaagcagaaatacggcgaagcgaacgtctcgcagatcggtacgttcggcacg
ctgaaggccaaggcggcgattcgggacgtcggccgcgcactgtcgatccccctcccccgc
gtcgacgccgtcgcgaaaatgatcccggaagagctgaatatcgagctgaaggaggctctc
gaaaagagcgccgagctgaaggagcagtacgagggggatccgcagatccgcgaactgctc
gacatggcgattcagctcgaagggctggcgcgcagtgcgggaacgcacgcggccggcgtg
gtggtggccgaccggccgatcggcgactacgtgccattgcagacgatctcgggcaagacc
gacgtcgtgacgcagtgggacgggccgacggtcgaaaaagccggcttcctgaaaatggac
tttctgggcctgcggaacctgacgatcctcgacaaggcggtgatcaacgtccggaagcac
cgcggcgtggagatcgaccccgtcaagctgccgatcgacgacaaggagacgttcgccctg
ctgcagcgaggggaaacgaaggggatcttccagcttgagtcgggcgggatgcgcgacctg
ctgacgaagatgaagcccgacagcttcctcgacatcatcgccacctcggccctctaccgg
cccggtccgctcgaaggcggcatggtgatgacctacgtggacgtcaaacacggccggcag
ccgctgccccgcgtccacccgatcatggacagcatcctggacgagacctacggggtcatg
gtctaccaggaacaggtcatgcggattctcaaccgcctcggcgggatcgagctgtcgcag
tcgtatcagtgcatcaaggcgatcagcaaaaagaagctggagacgatcgccaagtaccgg
gcgcagttcctggaaggctccgccgcgaacggcctggccgagcagaccgccattgagctg
ttcggcatgatcgaaaagttcgccgggtatggcttcaacaagtcgcactcgacggcgtac
ggggcggtggcctatcagacggcatatctgaaggcgcactatccggccgagttcatggcc
gccctgctctcctgcgaaatggaagacaccgaccggatctccgagcacgtcgatgactgc
cggcggatgaagatcgaaatccttccgccggatatcaaccacagcgaggtcgagttcggt
gtgctgggggacaagctgacgttcggtctcggcgctctgaaaggcgtgggcgaggcggca
ttgcacgccatcgtcgaagagcggaccgcaaacgggccgttcaccagcatctttgatctg
gcggaacggatcgacccgaaagccctcaacaagtctgtgctggaactgctggtgaaggcg
ggggcgctcgactgcctcggcggccggcggtcgcagttgatcacggtcgtcgagcgggcg
gtgcaggcgtcgcagtcgcggcataaggacaaggcgcgggggcagaagaacctgttcggc
ggcgatgacgacgaagcgacccccgaggaagccgcggcggcggtgatgaccgccctgccc
gacgtccccgagtggtcgcagcgcgagaagctgcagtacgaaaaggagacgctcggcttc
tacctgaccagtcacccgctgaccgagctggcggaccagctccggtcgtacgcgacgcac
gccgcgcgcgagctcgtcgaactcgatgacgggtccgaagtcgtgctgggggggatgatt
tccgcgatcaagaaggcgacgacgaagaagccgagccggaacgggcattccaagtacgtg
aacttcgacttcgaagatccgagcggcgtggtccgctgcatcatgtggccggaagacttc
gcccggctgggggaaaaggtcgaacaggacgcggtgcggttcctgaagggaaaagtcgac
aagcggagccgggagccgaacgtcgtcgtcgattcgatgtggacgctggaagaagtcgag
cgggacttcacgcggcaggtggcgatcaagtttcagaagggggtccacgacacgcgcgtc
gtcaaccgcgtgcgggacattctgaacaagcaccccgggcggacggaggtggtgctcttc
gtggataccgccgaggacgcgcagccctcggcccggatccggttcatcgcgcagaagccg
ctggagcagaaggtgagttgtacgcgggagctgcggaccgagctgagcgatgcgctgggg
gacgggaacctgaagttcatggcggaaccgcgcacggcgagtcggtcgggggggagcgtg
gggcggtag
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integrated database retrieval system
