Planctellipticum variicoloris: SH412_002452
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Entry
SH412_002452 CDS
T09866
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pvar
Planctellipticum variicoloris
Pathway
pvar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SH412_002452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvar03019
]
SH412_002452
03009 Ribosome biogenesis [BR:
pvar03009
]
SH412_002452
Enzymes [BR:
pvar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SH412_002452
Messenger RNA biogenesis [BR:
pvar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SH412_002452
Ribosome biogenesis [BR:
pvar03009
]
Prokaryotic type
rRNA helicases
SH412_002452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SWI2_SNF2
YmjE
Helicase_C_2
Flavi_DEAD
NAT10_TcmA_helicase
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
WLD12319
LinkDB
All DBs
Position
complement(3183513..3184754)
Genome browser
AA seq
413 aa
AA seq
DB search
MEQDQVSFDNLGLSEATLAGIRQAGFQSPSPIQAAFIPIAITGADCIGQAQTGTGKTAAF
VLPILERIDFKDTRTQVLVLTPTRELSQQVADEAERLSVHHPVRTACCVGGRPLRQQIAA
LQRGAQIVVGTPGRVIDLMARRDLNTSDLKIIVMDEADRMLDIGFRPDIEKILRQCPKDR
QTLLLSATLPAPVERLAQKYMHNPTRIDLSIKNIGQNSIDQYYIPVDHDRKFKTLVQLLV
QERPQQAIVFTRTKRGAEEVFRRFADRLAGTAYLHGDLAQSARDRTMKKFREGRIRLLIA
TDVVGRGIDVSGISHIINYDVPEDCDDYVHRVGRTGRLSTQDIRNAAFTLVCRDEGQQLT
NIEVRINRVLPAYHIEGIETQRPGPKRAVATSAALEHTALQPEEEEEFGAMLV
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggatcaggtaagttttgacaaccttgggctcagtgaggcgactctcgccggc
attcgacaggcaggctttcagtctccgagccccattcaggccgcatttatccccatcgcc
atcactggcgctgactgcattggacaggcacagacaggcaccggcaagacggccgcgttt
gtgctgcccattctcgaacgaatcgatttcaaggacacccggactcaagtcctggtcctg
acgccgacgcgggaactcagccagcaggtcgccgacgaagccgagcggctttcggtgcat
catccggtgcgaacggcctgctgcgtcggcggtcgcccgctccggcagcagatcgcggct
ctccagcgcggcgcccagattgtcgtcggaacgcccggtcgcgtcatcgacctgatggcc
cgtcgcgatctcaatacgagcgacctcaagatcatcgtgatggacgaggccgaccggatg
ctcgacatcggcttccggccggacatcgagaaaatcctccgacagtgcccgaaggatcga
cagacgctgctgctttcggcgacattgcccgccccggtcgagcggctcgcccagaagtac
atgcataatccgacgcgaatcgatctgtcgatcaagaacatcgggcagaactcgatcgat
cagtattacatcccggtcgaccacgaccggaagttcaagacgctggttcaactgctcgtc
caggagcggccgcagcaggccattgtcttcacccggacgaaacgcggagccgaggaagtc
ttccgtcgattcgccgaccgtctcgcgggcaccgcctacctgcacggcgatcttgcccag
tcggcccgcgatcggacgatgaagaagttccgcgaaggacggattcgtctgctgattgcg
accgacgtggtgggacgcggcattgatgtgagcggcatttcgcacatcatcaactatgac
gttcccgaagactgcgacgactacgtccatcgcgtcggccggaccggccgactctcgacg
caggatattcgcaacgctgctttcacgctggtctgccgcgacgaaggtcagcagctcacc
aacatcgaagtccgcatcaatcgcgttctcccggcgtatcacatcgaagggatcgaaacg
cagcgacccggcccgaaacgggctgtcgcgacctccgccgccctggagcacaccgcgctg
cagccggaggaagaagaagaattcggggccatgctggtttga
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