Planctellipticum variicoloris: SH412_003712
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Entry
SH412_003712 CDS
T09866
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pvar
Planctellipticum variicoloris
Pathway
pvar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SH412_003712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvar03019
]
SH412_003712
Messenger RNA biogenesis [BR:
pvar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SH412_003712
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_3
RMMBL
Motif
Other DBs
NCBI-ProteinID:
WLD13540
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All DBs
Position
complement(4779087..4780391)
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AA seq
434 aa
AA seq
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MQVTIHRGTHEIGGNCIEIATDRTRIILDIGMPLFNEDREPHDSAQLRRHSAEELRRVGI
LPQVPGLFEDGPAPDAILLSHAHEDHTGLIRHSQNEIPIYAGVGTSKMMLAGAKFAGQPT
LPRHRHRELPSGQTIQIGDFAVTVFSVDHSIYGAQAFLIEAEGKSVLYSGDLRLHGRKPG
MHRSLIEAVKDRAIDVLLMEGTHISHPDHWGPNEYELEDEITELVRSAPGLVLASFSPQH
VDRLVGFYRATIKAGRTFVADTYTAFVMHLLASETSIPRPESAENVKVFFPKFFLETFEK
KRLEGFFFLMSPARIGVEEIRSNPSQYVMLFRPSMLESDFGGTLPPGTRCLYSRWTGYLD
RPDWQPVKDALTKAEGDLIEVHTSGHIFHGDIIDLVGQLSAKLVVPIHTFEPEKFQAFLS
TVKLLADGETMEVT
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtcacgattcaccggggaactcacgagatcggtggcaattgcatcgagatcgcc
acggatcgaactcgaatcatcctcgacatcgggatgccgctgttcaacgaggaccgggag
ccccacgattcggcccagctccggcgacactctgcagaggaactccgccgagtcggaatt
ctgccccaggtgccagggctgtttgaggacggcccggctccggatgccattctcctctcc
cacgctcacgaggatcacaccggactgatccgacactctcaaaatgaaatcccgatttat
gccggagtggggacgagcaagatgatgctggccggagcgaagtttgccggtcaaccgaca
ctgccgagacatcgacatcgggaacttccttccgggcagaccatccagatcggggacttc
gcggtcaccgtgttctccgtcgaccactccatctacggggctcaggcattcctcatcgaa
gccgagggcaagtcggtcctctactcgggggacctgcggctccacggccggaagccaggg
atgcaccggtcgctcattgaagccgtcaaagaccgggccatcgacgtcctcctgatggag
gggacgcacatcagccatcccgaccattggggaccgaacgagtacgaactcgaagacgag
atcacggagctggtccggtcggctcctgggctggtcctggcgtcattttcaccccagcac
gtcgaccggctggttggcttctaccgtgcgacgatcaaagccggccgaaccttcgtcgcc
gacacctacaccgccttcgtgatgcacctgctcgcctcagagacttccatcccgaggccg
gagtcggccgagaatgtgaaggtcttcttcccgaagttctttctggagactttcgaaaag
aaacgactcgaaggatttttctttttgatgtccccggcccggattggggtggaggaaatc
cgctcgaatccgtcccagtacgtcatgcttttccgccccagcatgctggagagcgacttc
ggcggaacccttccgccgggcacgcgatgcctctactcacgctggacgggttacctcgac
cgcccggactggcagcccgtgaaagacgctctgacgaaagccgaaggcgacctgatcgag
gtccacaccagcggccacatcttccacggcgatatcatcgacctcgttggtcagctcagc
gcgaagcttgtggttccgattcacacgtttgaacccgagaagttccaggcgtttctatcg
acagtgaaactcctggcggatggcgaaacgatggaggtgacgtaa
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