KEGG   Planctellipticum variicoloris: SH412_003712
Entry
SH412_003712      CDS       T09866                                 
Name
(GenBank) MBL fold metallo-hydrolase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
pvar  Planctellipticum variicoloris
Pathway
pvar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SH412_003712
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvar03019]
    SH412_003712
Messenger RNA biogenesis [BR:pvar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SH412_003712
SSDB
Motif
Pfam: Lactamase_B_2 Lactamase_B Lactamase_B_3 RMMBL
Other DBs
NCBI-ProteinID: WLD13540
LinkDB
Position
complement(4779087..4780391)
AA seq 434 aa
MQVTIHRGTHEIGGNCIEIATDRTRIILDIGMPLFNEDREPHDSAQLRRHSAEELRRVGI
LPQVPGLFEDGPAPDAILLSHAHEDHTGLIRHSQNEIPIYAGVGTSKMMLAGAKFAGQPT
LPRHRHRELPSGQTIQIGDFAVTVFSVDHSIYGAQAFLIEAEGKSVLYSGDLRLHGRKPG
MHRSLIEAVKDRAIDVLLMEGTHISHPDHWGPNEYELEDEITELVRSAPGLVLASFSPQH
VDRLVGFYRATIKAGRTFVADTYTAFVMHLLASETSIPRPESAENVKVFFPKFFLETFEK
KRLEGFFFLMSPARIGVEEIRSNPSQYVMLFRPSMLESDFGGTLPPGTRCLYSRWTGYLD
RPDWQPVKDALTKAEGDLIEVHTSGHIFHGDIIDLVGQLSAKLVVPIHTFEPEKFQAFLS
TVKLLADGETMEVT
NT seq 1305 nt   +upstreamnt  +downstreamnt
atgcaagtcacgattcaccggggaactcacgagatcggtggcaattgcatcgagatcgcc
acggatcgaactcgaatcatcctcgacatcgggatgccgctgttcaacgaggaccgggag
ccccacgattcggcccagctccggcgacactctgcagaggaactccgccgagtcggaatt
ctgccccaggtgccagggctgtttgaggacggcccggctccggatgccattctcctctcc
cacgctcacgaggatcacaccggactgatccgacactctcaaaatgaaatcccgatttat
gccggagtggggacgagcaagatgatgctggccggagcgaagtttgccggtcaaccgaca
ctgccgagacatcgacatcgggaacttccttccgggcagaccatccagatcggggacttc
gcggtcaccgtgttctccgtcgaccactccatctacggggctcaggcattcctcatcgaa
gccgagggcaagtcggtcctctactcgggggacctgcggctccacggccggaagccaggg
atgcaccggtcgctcattgaagccgtcaaagaccgggccatcgacgtcctcctgatggag
gggacgcacatcagccatcccgaccattggggaccgaacgagtacgaactcgaagacgag
atcacggagctggtccggtcggctcctgggctggtcctggcgtcattttcaccccagcac
gtcgaccggctggttggcttctaccgtgcgacgatcaaagccggccgaaccttcgtcgcc
gacacctacaccgccttcgtgatgcacctgctcgcctcagagacttccatcccgaggccg
gagtcggccgagaatgtgaaggtcttcttcccgaagttctttctggagactttcgaaaag
aaacgactcgaaggatttttctttttgatgtccccggcccggattggggtggaggaaatc
cgctcgaatccgtcccagtacgtcatgcttttccgccccagcatgctggagagcgacttc
ggcggaacccttccgccgggcacgcgatgcctctactcacgctggacgggttacctcgac
cgcccggactggcagcccgtgaaagacgctctgacgaaagccgaaggcgacctgatcgag
gtccacaccagcggccacatcttccacggcgatatcatcgacctcgttggtcagctcagc
gcgaagcttgtggttccgattcacacgtttgaacccgagaagttccaggcgtttctatcg
acagtgaaactcctggcggatggcgaaacgatggaggtgacgtaa

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