Planctoellipticum variicoloris: SH412_004785
Help
Entry
SH412_004785 CDS
T09866
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K02584
Nif-specific regulatory protein
Organism
pvar
Planctoellipticum variicoloris
Pathway
pvar02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SH412_004785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvar03000
]
SH412_004785
Transcription factors [BR:
pvar03000
]
Prokaryotic type
Helix-turn-helix
Other families
SH412_004785
BRITE hierarchy
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_16
AAA_2
TIP49
AAA_5
Motif
Other DBs
NCBI-ProteinID:
WLD14596
LinkDB
All DBs
Position
6139550..6141055
Genome browser
AA seq
501 aa
AA seq
DB search
MTFTHPHVIPFPGRASAPAESPVSVMVLAVDPHQAQQLAFDVQATGAPCRIVHTIDAALQ
ALAQQSSDVCLVGQLSTGESAAGLASQISQRGWSTQLVCLLPAPASDLPTYLPAAAGVEL
LASPYTPLMLTHAISAAMQRAKLHGENRRLRRQLINRNLRDMVGHSPAMQVLRQQVQQAA
EAAGGVLLLGEPGTGVDVVAQAIHDSSRRAHRPFIKIDCSVLSAEVLEEELCGLVEQTPH
GAPIRQPGRLELADGGTLLLDHANCIALPLQRRLTQMIHEGRFDHPQNNERVRFDVRIVL
SAHVDLDDLMERGLFRRELYAEVGAGRIELPTLRSRKEDIGLLTEHFLRRVAAREGRPPR
SITLEALRLLQDYSWSGNVRELENLIERTCALDWGTKLTASMIEPWLARPTDEDDSEGVA
GLTLAEMERKLIEATFVRFAGNREKTAKALQIGIRTLSGKLRDYGYPPRGGPGSNLKPWR
PEADADLPAVIELPAVETKAA
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttacacatccccatgtcattccgtttccgggccgggccagcgcgccagcggaa
tcgcccgtttctgtgatggtcctggcggtcgatccgcaccaggcccagcaactggcgttc
gacgtgcaggccaccggcgctccctgtcggatcgtgcatacgatcgacgccgcgctgcag
gccctcgcccagcagtcctccgacgtctgcctcgtcggccaactgtcgaccggcgagtcc
gcggcgggcctggcctcgcagatctcccagcgcggctggtcgacgcaactggtctgcctg
ctgccggcgccggcgtcggacctcccgacctatctgccggcggccgcgggcgtcgagctc
ctggcctccccctataccccgctgatgctgacccacgccatttccgccgcgatgcagcgg
gccaagctgcacggcgagaatcggcggctgcggcggcagctcatcaaccggaacctgcgg
gatatggtcgggcacagccctgccatgcaggttctgcgacagcaggtccagcaggcggcc
gaggccgcggggggcgtgctgctgctcggcgaaccaggaaccggggtcgacgtggtggcc
caggcgattcacgattcgagccggcgggcgcatcggccgttcatcaagatcgactgcagc
gtgctgtccgccgaagtgctcgaagaagagctgtgcggactggtcgagcagacgccgcac
ggagcgccgatccggcagcccggacggctggaactggccgacggcggcacgcttctgctg
gaccacgcgaactgcatcgcactgccgctgcagcgacggctgacccagatgatccacgaa
ggccgcttcgatcatccgcagaacaacgaacgggtccggttcgacgttcgcatcgtgctc
agcgcgcacgtcgacctggacgacctgatggagcgcgggctgttccgccgggagctttat
gccgaagtcggggccggtcgcatcgagctgccgacgctgcggtcccgcaaggaagacatc
ggcctgctgaccgagcacttcctgcgtcgcgtggcggcgcgggaaggccggcctccccgc
tcaattacgctcgaagcgctgcgactgctgcaggactactcgtggtccggcaatgttcgc
gagctggagaatctgatcgaacggacctgtgcgctcgactggggcaccaagctgacggcg
tcgatgatcgagccgtggctcgcccgcccgacggacgaggacgactccgaaggggtggcg
gggctcacgctcgccgaaatggaacggaagctgatcgaagcgaccttcgtccggttcgcg
ggcaaccgcgagaagacggccaaggcgctgcagatcggaattcggacgctgtcgggcaag
ctgcgcgactacggttacccgccgcgcggcggccccggttcgaacctgaagccctggcgt
ccggaagcggacgccgatttgccggcggtcatcgagctgccggccgtcgagacgaaagcg
gcgtag
DBGET
integrated database retrieval system
