Planctellipticum variicoloris: SH412_004876
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Entry
SH412_004876 CDS
T09866
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pvar
Planctellipticum variicoloris
Pathway
pvar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SH412_004876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvar03019
]
SH412_004876
Messenger RNA biogenesis [BR:
pvar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SH412_004876
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_3
RMMBL
Motif
Other DBs
NCBI-ProteinID:
WLD14685
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Position
6243842..6245143
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AA seq
433 aa
AA seq
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MQITIHRGTHEIGGNCIEIATDRTRIILDIGMPLFNEDREPHDSAQLRRHSAEELRRLGI
LPQVPGLFEDGPAPDAILLSHAHEDHTGLIRHSRNEIPIYAGVGTSKMMLAGAKFAGQPT
LARDRHRELPAGQTVQIGDFAVTVFSVDHSIYGAQAFLIEAEGKSVLYSGDLRLHGRKPG
MHRSLIEAVKDRAIDVLLMEGTHISHPDHRGPNEYELEDEITEQVRSALGLVLASFSPQH
VDRLVGFYRATIKAGRTFVADAYTAFVMHLLASESSIPRPESAENVKVFFPKFFLETFEK
KRLEGFFTLMSPARIGVEEIRSNPSRYVMLFRPSMLEGDFGGTLPPRTRCLYSRWTGYLD
RPDWQPVKDALTKSEGDLIEVHTSGHIFHGDIIDLVGQLSAKLVVPIHTFEPEKFQAFLS
TVKLLADGETMSL
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcacgattcaccggggaactcacgagatcggtggcaattgcatcgagatcgcc
acggatcgaactcgaatcatcctcgacatcgggatgccgctgttcaacgaggaccgggag
ccccacgattcggcccagcttcggcgacactctgcagaggaactccgccgactcgggatt
ctgccccaggtgccagggctatttgaggacggcccggctccggatgccattctcctctcc
cacgctcacgaggatcacaccggactgatccgacactctcgaaatgaaatcccgatttat
gctggagtggggacgagcaagatgatgctggccggagcgaagttcgccgggcaaccaacg
ctggcgagagaccgacatcgggaacttcctgccgggcagaccgttcagatcggggacttc
gcggtcaccgtgttctccgtcgaccactccatctacggggctcaggcattcctgatcgaa
gccgagggcaagtccgtcctctactcaggagacctgcggctccacggccgcaagccaggg
atgcaccggtcgctcattgaagccgtcaaagaccgggccatcgacgtcctcctgatggag
gggacgcatatcagtcatcccgaccatcggggaccgaacgagtacgaactcgaagacgag
atcacggagcaggtccggtcggctcttgggctggtcctggcgtcattctcaccccagcac
gtcgaccggctagttggcttctaccgtgcgacgatcaaagccggccgaaccttcgtcgcc
gacgcctacaccgccttcgtgatgcacctgctcgcctcagagagttccatcccgaggccg
gagtcggccgagaatgtgaaggtcttcttcccgaagttctttctggagactttcgagaag
aaacgactcgaaggatttttcactttgatgtccccggcccggattggggtggaggaaatc
cgctcgaatccgtcccgatacgtgatgctttttcgccccagcatgctggagggcgacttc
ggcggaacccttccgccgcgcacgcgatgcctctactctcgctggacgggttacctcgac
cgcccggactggcagcccgtgaaagacgctctgacgaaatccgaaggcgacctgatcgag
gtccacaccagcggccacatcttccacggcgatatcatcgacctcgttggtcagctcagc
gcgaagcttgtggttccgattcacacgtttgaacccgagaagttccaggcgtttctatcg
acagtgaaacttctcgcagatggggaaacgatgtcgctctga
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