Pseudoalteromonas viridis: J5X90_02560
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Entry
J5X90_02560 CDS
T07232
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5X90_02560 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvb03019
]
J5X90_02560 (recQ)
03400 DNA repair and recombination proteins [BR:
pvb03400
]
J5X90_02560 (recQ)
Enzymes [BR:
pvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5X90_02560 (recQ)
Messenger RNA biogenesis [BR:
pvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J5X90_02560 (recQ)
DNA repair and recombination proteins [BR:
pvb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J5X90_02560 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
HEM4
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
QTL35957
LinkDB
All DBs
Position
1:589814..591628
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AA seq
604 aa
AA seq
DB search
MENLATHSIDTPHGVLKEVFGYSDFRDGQLDVIQACLDGRDSLVLLPTGGGKSLCYQVPA
LLLPGTCIVVSPLISLMQDQVAQLKALGVSAEFINNSIDRAQQQAIYQRLHQGEIKLLYV
APEKVLQSEFIERLSHLKLGLFAIDEAHCVSHWGHDFRPHYCRLHELKQRFATVPMMALT
ATADLATRSDIVTQLGLHTPFIHTGSFDRPNIRYTIEEKFKPLSQLMRYLRTQKGQSGIV
YCSSRKRVDDISEKLVEAGFNAAAYHAGMTNEQRQFVQNAFARDDIQIVVATVAFGMGIN
KSNVRYVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVKRFFEDIEDEHRR
RVEEQRFNSMASFASAQTCRRQILLNYFSEYQREPCGNCDICLNPPKRFDGTLVAQQALS
CIYRAEQRFGLGYIVDVLRGANTARIRDNQHHTLSTYGIGKEHSNEYWLSILRQLIHHGL
VAQDITQGAALRLTEGARSVLRGEYALQLAQPRLEAKHVYQDKLAQFNYDKKLFAKLRSL
RKELADQDDVPPYVVFSDKTLAEMAQLLPTSDSEFLKVSGVGFTKLSKYGAPFMQLIRNY
LDTD
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatcttgcaactcactcaatcgacacaccgcacggcgtactgaaagaagttttt
ggctacagtgacttccgtgacgggcaactcgacgtcattcaggcgtgcctggacgggcgc
gacagcttagtgttgctgccgacaggcggtggcaaatctttgtgttatcaggtacctgct
ttactcttacccggcacctgtattgtggtgtctccgcttatctctttgatgcaggatcag
gttgcccaactcaaggcgttaggggtcagcgcggagttcatcaataacagcattgaccgg
gcgcagcagcaagccatttatcagcgtctgcatcagggcgagatcaagctattgtatgtc
gcaccagagaaagtcttgcagagtgagtttatagaacgtctgagccatctgaagctgggg
ttatttgccatcgacgaagcccactgtgtatcgcactggggacacgacttccggccccac
tactgccgtctgcatgagttaaaacagcgctttgctacggtgcctatgatggcgctgaca
gcaacggccgatttagccacccgcagtgacattgtcacccagcttggcttgcacaccccg
tttatccataccgggagttttgacagaccgaatattcgttacaccatagaagaaaagttc
aaacccctgtcacaattgatgcgctacctgcgtacgcaaaaggggcaaagtggtattgtt
tattgctccagccgtaaacgcgttgacgatatttcagaaaagctggttgaggccggcttt
aacgctgcggcatatcatgccggcatgaccaacgagcaacgccagtttgtgcaaaatgcc
tttgcccgcgatgacattcaaattgttgtggcgaccgtagcgtttggtatggggattaat
aaatcgaacgtgcgttatgtattgcattacgacatccccaaaagtattgaggcgtattac
caggaaaccgggcgcgccggacgtgacggcctggctgcggaagccattatgtatttcgac
cccgccgacattggccgggtaaaacgcttttttgaggacattgaggacgaacatcgccgc
agagttgaagagcagcgctttaactcaatggccagctttgcctcggcacaaacctgtcgc
cgccagatcctgctcaattacttcagcgaatatcagcgtgagccctgcggtaactgcgat
atttgcctgaacccaccaaagcgctttgacggcactttggtcgctcagcaagcattatcc
tgtatttatcgggcagagcagcgctttggattgggctacattgtcgatgtcctgcgcggt
gccaataccgcccggatccgcgacaatcagcatcacacactcagcacctatggcataggc
aaagaacacagtaatgaatactggctgagtatcttgcgacaactgatccatcacggactg
gtcgcacaggatatcactcagggcgcggcactgcgcctgaccgaaggagcccgctcggta
ctgcgtggtgaatatgcgctgcaactggcgcagccgcgactggaagccaagcacgtttat
caggataaactggcacaattcaattacgataaaaagctgtttgccaagctgcgtagcctg
cgcaaagagctggccgatcaggacgatgtaccgccctatgtggtattcagtgataaaacc
ctggcggaaatggcgcagctgctcccgaccagcgacagcgagttcctgaaagtctccggg
gttggctttaccaagctcagcaaatatggtgcgccctttatgcagctgatccgcaattat
ctcgacaccgattaa
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