Pseudoalteromonas viridis: J5X90_02725
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Entry
J5X90_02725 CDS
T07232
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5X90_02725 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvb03019
]
J5X90_02725 (pcnB)
Enzymes [BR:
pvb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
J5X90_02725 (pcnB)
Messenger RNA biogenesis [BR:
pvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J5X90_02725 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
QTL35987
LinkDB
All DBs
Position
1:627418..628749
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AA seq
443 aa
AA seq
DB search
MTCSTAPVLIPRSEHAISRKQFSPNAIKVLYRLKDGGYDAYLVGGCIRDILLGIEPKDFD
VVTNATPEQVKKLFRNCRLIGRRFRLAHIVFGREIIEVATMRGHHQAQDNPDPTSQSSDQ
GQLLRDNVYGTIEEDAQRRDFSINALYYSINDFSIRDFAGGIAAIEHRKIELIGDPETRY
REDPVRMLRAVRFATKLDMTIAGPTEAPIAELAPLLGNIPAARLFEETLKLFLGGKAEAN
FLMLRKYGLFKQLFPALDAILDNPQSEFETTFIRKMFANTDERINADKKVTPAFIYAALL
WFPLRDRCNTLTAEGMNEYDAFMQAISQILAENARHIAVPKRFTLGARDIWHIQQRLDKR
GGQRAYRLSLQPRFKAGYDFLLLRVESGETDQQELANWWTDYLQQDVSGQKEMVKNLGQR
SGGSERRRRRPRNKPRRKPNPES
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
gtgacatgcagcactgcacctgtgttaattccacgcagtgagcatgctatctcgcgcaaa
caatttagccccaatgcaatcaaagtattataccgactgaaagacggaggctatgatgcc
tacctggtcggtggttgtattcgtgatattttgttagggattgagcccaaagatttcgac
gtagtgaccaacgcaacgcctgaacaagttaaaaagctgtttcgtaactgtcgcttgatc
ggccgccgctttcgccttgcgcatattgtgttcggccgtgagatcatcgaagtagcgacc
atgcgtggacaccaccaggctcaggacaacccggatccgaccagccagtcgagcgatcaa
ggtcagctgctgcgcgacaacgtgtatggcaccattgaagaagatgcacaacgtcgcgac
ttttcaattaatgcactttactattcaattaacgacttcagcatccgggattttgccggt
ggtattgcggccattgagcatcgtaaaatcgaattgatcggcgaccctgaaacccgatat
cgcgaagaccccgtgcgtatgctgcgtgctgtgcgctttgccactaagctggatatgacg
attgccggtccgaccgaagcgccgatcgctgaattagcgcctttgctgggtaacattcct
gcggcgcgcctgtttgaagaaactctgaaactctttttgggcggcaaggccgaagccaac
tttttgatgctgagaaaatacggcttgtttaaacagctgtttccggccttagatgcgatt
ttagataaccctcagagcgaatttgaaacaacctttatccgcaaaatgtttgccaacacg
gatgagcgtatcaatgccgataagaaggtcacgccagcctttatttatgccgcactgttg
tggttcccgttgcgcgaccgttgcaatacactcacagctgaaggcatgaatgaatacgat
gcctttatgcaggctatcagccagatactggctgaaaacgcccgccatatcgccgtacca
aaacgctttacactgggtgcgcgcgatatctggcatattcagcaacgactcgacaaacgt
ggcggccagcgtgcttatcgcctcagcttgcaacccagatttaaagcgggttacgacttc
ttactactgcgggtagaaagtggcgaaacggaccagcaagagctagcaaactggtggacc
gactatttacaacaagacgtgtctggacaaaaagagatggtgaaaaacctcggccagcgc
tcaggcggctcggaaagacgcagacgccgccccagaaacaaaccacgcagaaaacctaat
ccggaatcatga
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