Pseudoalteromonas viridis: J5X90_03890
Help
Entry
J5X90_03890 CDS
T07232
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03030
DNA replication
pvb03410
Base excision repair
pvb03420
Nucleotide excision repair
pvb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J5X90_03890 (polA)
03410 Base excision repair
J5X90_03890 (polA)
03420 Nucleotide excision repair
J5X90_03890 (polA)
03440 Homologous recombination
J5X90_03890 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvb03032
]
J5X90_03890 (polA)
03400 DNA repair and recombination proteins [BR:
pvb03400
]
J5X90_03890 (polA)
Enzymes [BR:
pvb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J5X90_03890 (polA)
DNA replication proteins [BR:
pvb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J5X90_03890 (polA)
DNA repair and recombination proteins [BR:
pvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
J5X90_03890 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J5X90_03890 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
WH_GTF3C1_N
Motif
Other DBs
NCBI-ProteinID:
QTL36203
LinkDB
All DBs
Position
1:complement(882172..884925)
Genome browser
AA seq
917 aa
AA seq
DB search
MSQIPENPLILVDGSSYLFRAYHAPPHLTNSKGEATGAIYGVINMLKSLLKQYQPSHMVV
VFDAKGPTFRNEMYSEYKAHRPPMPDDLRTQIAPIHDIIRAMGLPLVSIEGVEADDVIGT
FSRLASEQQRHVLISTGDKDMAQLVNEHVTLINTMTNTILDPQGVVDKFGIGPELIIDYL
ALMGDKVDNIPGVPGVGEKTALAMLQGLGSIDDLYANLDKIADLGFRGSKTMAKKLAEHE
AQLKLSYELATIKLDCEVEQDLEQFKIQEMDKDQLIELYGQCEFKRWLAELLDGKSAPET
AADTEQDSVVTPPVEVDYETILEREQLDRWLDKLREAELFAFDTETTSLDYMQAELVGMS
FAVAAGEAAYLPLGHDYVGAPEQLDKQLVFELIGPILADPKYKKVGQNLKYDKSVLARAG
LELNGIAFDTMLESYVFNSVGTRHDMDSLALKYLGHKNISFEEIAGKGKNQLTFNQIELD
KAAPYAAEDADITLRLHQHLWPQLQQHPTLVSVFEDIELPLVSVLSEIERTGVKIDSDML
ATQSHNIETRLKELEQEAFELAGEEFNLSSTKQLQAILFDKLELPVLKKTPKGAPSTAEE
VLQELAHDYPLPKLIIEHRGLAKLKSTYTDKLPKMVNEQTQRVHTSYHQAVTATGRLSST
DPNLQNIPIRNEAGRRIRQAFVADQDHVIMAADYSQIELRIMAHLSQDAGLLKAFAEGKD
VHSATASEVFSVPLEEVTSDMRRKAKAVNFGLIYGMSAFGLARQLDIPRHEAQHYMDKYF
ERFPGVLEYMESTREKAAEQGYVETLFGRRLYLPDIKARNGARRKAAERAAINAPMQGTA
ADIIKKAMIKVAQWLATQQDSDIKLLMQVHDELVFEVKADKVAQYSEHICQLMSEAADLD
VPLLVEADHGDNWEQAH
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagatccctgaaaatccgctgatcctggtcgatggttcgtcgtatttgtttcgt
gcctatcatgcgccaccgcacctgaccaactccaaaggagaagctactggcgccatttac
ggtgtcatcaacatgctgaaaagcttgctcaagcaatatcagcccagccatatggtagtg
gtgtttgatgccaaagggccgactttcagaaatgagatgtacagtgaatataaagcacat
cgtccaccgatgccggatgatctgcgcacgcagatagccccgatccacgatattattcga
gcgatgggcctgccgctggtcagcattgaaggggtcgaagcagatgatgtcattggtacc
ttctcgcgcctggcgtcagagcaacaaaggcatgtgctgatcagcacgggtgataaagat
atggcacagctggtcaatgagcatgtcacgttaattaacaccatgaccaacaccatttta
gatccgcagggcgtagtggataagtttggtatcgggccagaattgatcatcgattacctg
gcgctgatgggtgataaagtggataacatcccgggtgtgcctggcgtgggtgaaaaaacc
gcgctggccatgttgcaggggctgggatcgattgacgatctctatgccaatctggataaa
atcgctgatctgggtttccgtggctcaaaaaccatggcgaaaaaactggcagagcacgaa
gcacaactgaagttatcctacgagctggcaaccatcaaactggattgtgaggttgaacaa
gatctggaacaattcaagatccaggaaatggacaaagatcagttgattgagctgtatggc
caatgtgaattcaaacgctggctggctgaactgctggatggtaaaagcgcgcctgaaacg
gccgcagacacagagcaggactctgtggtcacgccaccggttgaggtggactatgagacc
attttagagcgcgaacaactggatcgctggctggataagctgcgcgaggccgagctgttt
gcctttgataccgaaaccaccagtctggattatatgcaggcggagctggttggtatgagc
tttgcggttgctgctggcgaagcggcctacctgccgctgggccacgattatgtgggcgcg
cccgaacagctcgacaagcaactggtgtttgagttgatcggccctattctggcagatcct
aagtataagaaggtcgggcagaacctgaagtacgacaagagtgtgctggcccgtgccgga
ctggagctcaatggcattgcttttgacactatgctggaatcttacgtctttaacagtgtg
ggcacgcgccatgatatggactcgctggcactgaaatacctgggacataaaaatatcagc
tttgaagagatagccggtaaaggtaaaaaccagctgaccttcaatcagattgagctggat
aaagccgcgccctatgcggctgaagatgccgacatcactttgcgtttgcatcagcacctg
tggccgcaattgcagcagcaccccactttggtaagtgtgtttgaagacatcgagctgcca
ctggtcagcgtgctttctgagattgagcgcaccggtgttaaaatcgacagcgacatgctg
gccacgcagagccacaacattgaaacgcgccttaaagagttggagcaggaagcgtttgag
ctggctggagaagagttcaacctcagttcgaccaagcagttgcaggcgatcctgttcgac
aagctggaactaccggttttaaagaagacgcctaaaggcgcgccatcgacggcagaagag
gtgttgcaggaactggcccatgattatccgttacctaaactgatcatcgagcatcgtggc
ctggccaagcttaagtctacctataccgataaactgcctaagatggtgaacgagcagacc
cagcgtgtgcatacctcgtatcatcaggcggtgaccgccacgggtcgtctcagctccacc
gatcctaacctgcagaacattccgatccgcaatgaagccggacgccggatccgtcaggcc
tttgtggccgatcaggatcatgtgatcatggcggcggactacagccagattgaactgcgg
atcatggcgcatttgtctcaggatgcgggcttactcaaggcttttgctgagggtaaagat
gttcacagcgccaccgcatcagaggtcttctctgtaccgcttgaagaggttacgtcggat
atgcgccgcaaggccaaagcggtcaacttcggactgatctacggtatgagtgcctttggc
ctggccagacagctggatattccacgccatgaagcacagcactatatggataagtacttt
gaacgcttcccgggtgtgctggagtatatggagtcgacccgagagaaagccgcagagcag
ggctatgttgaaaccctgttcggccgtcgtttatatttgccagacatcaaggcacgtaac
ggtgcgcgtcgcaaggcggctgagcgtgctgctatcaacgccccgatgcagggcacagcc
gcagacatcattaaaaaggcgatgatcaaagtagcccagtggctggcaacgcagcaagac
agtgatattaaactattgatgcaggtacacgatgaactggtctttgaagttaaagccgac
aaagtggcgcagtacagcgagcatatttgtcagctgatgagcgaggctgccgacctggat
gtgcctttgttggttgaagcggaccatggtgacaactgggagcaggcgcattaa
DBGET
integrated database retrieval system
