Pseudoalteromonas viridis: J5X90_04290
Help
Entry
J5X90_04290 CDS
T07232
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J5X90_04290 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvb03021
]
J5X90_04290 (rpoA)
03400 DNA repair and recombination proteins [BR:
pvb03400
]
J5X90_04290 (rpoA)
Enzymes [BR:
pvb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J5X90_04290 (rpoA)
Transcription machinery [BR:
pvb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J5X90_04290 (rpoA)
DNA repair and recombination proteins [BR:
pvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J5X90_04290 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
QTL36276
LinkDB
All DBs
Position
1:complement(991818..992804)
Genome browser
AA seq
328 aa
AA seq
DB search
MQGSVTEFLKPRLVDIDAVSSTRSKVVLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSAKEGVQEDIIEILLNLKGLAVSLEGKDEVFLTLTKSGVGPVTAADIQHDGD
VTIANPEHVICHLTADNSEISMRIRVERGRGYVPASSRLSSDDDERPIGRLLLDASFSPV
ERIAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRASTILAEQLEAFVDLRDVSEP
EEKEEKPEFDPILLRPVDDLELTVRSANCLKAEQIQYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASLAE
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtaaccgaattcctaaaaccaagattagtcgatatcgacgctgtaagc
tcaacgcgttctaaagtagttttagagcctctagagcgtggtttcggccacacactaggc
aatgctctacgtcgtatacttctttcatctatgcctggttgtgctgtgacagaagttgaa
attgacggtgtattgcacgagtacagcgcgaaagaaggcgtacaagaagacatcattgaa
attctgttgaacctaaaaggtctggcagtatctctagaaggtaaagatgaagttttcctt
accctgactaagtctggtgtaggccctgtgactgcggctgatatccagcacgacggagac
gtgactattgccaaccctgagcatgtgatctgtcaccttacggctgacaatagtgagatc
agcatgcgcattcgcgttgagcgtggtcgcggttatgtaccggcgtctagtcgtttatcc
tctgatgacgatgagcgtccaatcggccgtttgctgcttgatgcatcattcagcccggtt
gagcgtattgcgtactcggttgagtcagctcgtgttgagcaacgcacagacttagacaaa
ctaatcatcgatatggaaacgaacggcactttggatcctgaagaagcgatccgtcgtgcg
tctactattcttgctgagcagctagaagcattcgtagacttacgtgatgtttctgagccg
gaagaaaaagaagagaagccagagttcgatcctattctgcttcgtccagtcgatgactta
gagctaactgtacgttctgcgaactgtctgaaagccgagcaaattcaatatatcggtgac
ttagtacagcgtactgaagttgagcttctgaaaacaccaaaccttggtaagaagtctctg
actgaaattaaagacgtgctagcttcacgtggtctttctctgggcatgcgcctggaaaac
tggccacctgcaagtctggctgagtaa
DBGET
integrated database retrieval system
