Pseudoalteromonas viridis: J5X90_06160
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Entry
J5X90_06160 CDS
T07232
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5X90_06160 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvb03021
]
J5X90_06160 (rho)
03019 Messenger RNA biogenesis [BR:
pvb03019
]
J5X90_06160 (rho)
Transcription machinery [BR:
pvb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
J5X90_06160 (rho)
Messenger RNA biogenesis [BR:
pvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
J5X90_06160 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA
Spore_III_AA
AAA_25
AAA_22
S1CSD-TOTE-2
Fungal_virus_P2_C
DUF961
Motif
Other DBs
NCBI-ProteinID:
QTL36618
UniProt:
A0ABX7VD43
LinkDB
All DBs
Position
1:complement(1450687..1451946)
Genome browser
AA seq
419 aa
AA seq
DB search
MHLRELKDKSINELVKLAESMGLENVARLRKQDIIFAILKAHAKSGENIYGGGVLEILQD
GFGFLRSSEASYLAGPDDIYVSPSQIRRFSLRTGDSISGLIRPPKDGERYFALLKVNEVN
FDKPENSRTKILFENLTPIHANERMVMERGNGSTEDITARVLDLASPIGKGQRALIVAPP
KAGKTMLLQNIAQSISYNNPDATLMVLLIDERPEEVTEMQRLVQGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKPDELQKMWILRKIVHEMSEIDAMEFLIDKLSMCKTNNEFFDSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcatttacgcgaactgaaagacaagtcaatcaatgagcttgtaaaacttgccgagtct
atggggctcgagaacgttgcccgtctgagaaaacaagacatcatcttcgccatcttgaaa
gcgcacgctaaaagcggcgaaaacatttatggcggcggcgtgctggaaattcttcaggat
ggtttcggctttttacgctcatcagaagcctcctacctggcaggcccggatgacatttat
gtttcgcccagccagatcagacgttttagcctgcgtacaggcgacagcatcagcggtctg
atccgcccaccaaaagatggtgagcgttactttgcgctgctgaaagtaaacgaagttaac
ttcgataagccagaaaactccagaactaagatcctgttcgagaacctgacaccaattcac
gccaacgaacgtatggtgatggaacgtggtaacggcagtacagaagacatcactgcgcgt
gttctggacctggcttctccaatcggtaaaggtcaacgtgcactgattgttgcaccacct
aaagccggtaagaccatgctgctgcaaaacattgcacagtctatttcttacaacaaccca
gatgcaacgctgatggtactgctgatcgacgagcgtccggaagaagtaacagaaatgcag
cgcctggtacaaggtgaagtcgtcgcctcaacgttcgacgagccagcaagccgccacgtg
caggttgcagaaatggtcatcgaaaaagcgaaacgtctggttgagcacaaaaaagacgtc
atcattttgctggactctatcacgcgtcttgctcgtgcctacaacaccgtgatcccatcg
tcaggtaaagttctgacaggtggtgtcgatgccaacgcactgcacaagccaaagcgcttc
ttcggtgctgcacgtaacgtagaagaaggtggcagcctgactatcatcgccacagccctg
atcgacacgggctcgaaaatggatgaagttatttacgaagagtttaagggtaccggtaac
atggaactgcacttaaaccgtaagattgctgaaaagcgcgtcttcccggccattgacttt
aaccgttcaggtacgcgccgcgaagagctcctcactaaaccagatgagctgcaaaaaatg
tggatcttacgcaaaattgttcatgagatgagcgaaatcgatgcaatggaattcctgatc
gacaagctgtcaatgtgcaaaaccaataacgagttctttgactcgatgaagcgtaaataa
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