Pseudoalteromonas viridis: J5X90_06170
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Entry
J5X90_06170 CDS
T07232
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5X90_06170 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvb03019
]
J5X90_06170 (rhlB)
Enzymes [BR:
pvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J5X90_06170 (rhlB)
Messenger RNA biogenesis [BR:
pvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J5X90_06170 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
QTL36620
LinkDB
All DBs
Position
1:1452583..1453869
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AA seq
428 aa
AA seq
DB search
MTKTHLTNKKFIDFALAPEVVAGLTASGFEYCTPIQAKCMPYISEGRDIAGQAQTGTGKT
LAFLTATCHRLLQSQSDAQVAGQPRALIMAPTRELAIQIHKDAQILAPACGLKLGLVYGG
EEYEKQRSQLEKGVDILIGTTGRLIDFYKQGAYNLNNIEVVVLDEADRMFDLGFIKDIRY
LFNRMPDTQQRLNLLFSATLSYRVQELAFEHMHNPIHVQIEPDVKTGKRIKEELFHPSQE
DKIPLLLTLIEEEWPDKAIVFANTKHSCENVYEWLKNDGHRVGLLTGDVNQKKRLSILSR
FTKGELDLLVATDVAARGLHIPEVSHVLNFDLPDDCEDYVHRIGRTGRAGASGHAISFAC
EQYAYNLHEIEEYIDHAIPVSHYDKSALLDDIKAPARQQRRRNPSGQRGNRSGNNRRQGS
YQKSRPRS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgactaagacacatttgaccaataaaaaatttatcgactttgctttagcgccggaagtg
gtcgccggtttgacagcgagtggcttcgaatactgtacgccaatccaagcaaagtgcatg
ccctatattagtgagggcagagacattgccggacaggctcagacaggaacaggtaaaacg
cttgcgtttttaactgcgacttgccacagactgttgcaaagccaatctgacgctcaggtt
gccggtcagccacgtgcattgatcatggcaccgacacgagagcttgcgatccaaatccac
aaagacgcacaaatattggcgccggcgtgtgggttaaagcttggcttagtatatggtggc
gaagaatacgaaaaacaacggtcgcagctagaaaaaggggtggatatcctaatcggcacg
accggtcgtctgatcgatttctataaacaaggtgcctataaccttaataacattgaagtt
gttgtcctggatgaagcagatcgcatgtttgatttgggcttcattaaagatattcgttat
ttgttcaatcgtatgccggatactcagcaacgtctgaacctgctgttttctgcgacgctt
tcttaccgtgtgcaggagctggcttttgaacacatgcacaatcctatccatgtgcagata
gagccggatgtcaaaacgggcaaacggatcaaagaagaattatttcatccttcgcaagag
gacaaaattcctttactgctcaccctgatagaggaagagtggccagacaaagccattgta
tttgctaataccaagcatagttgtgagaacgtctatgagtggctgaaaaatgatggacac
cgggtgggactgttaaccggtgatgtgaaccagaaaaaacgtttgtcgattttgtctagg
tttaccaaaggtgagttagatttgctcgtcgcgacggatgttgcagcgcggggcttacat
atccctgaagtgagtcatgtgctcaattttgatttaccagacgattgtgaagattacgtg
catcgtatcggtcgtactggccgagcgggtgcatcggggcatgcaattagctttgcctgt
gagcaatatgcttacaatttacatgagattgaagaatacattgaccatgcaattccggtt
tctcactacgataagtcagcattactagatgatattaaagcgccagccagacaacaaagg
cgcagaaatccatccggtcagcgcggtaatcgcagcggtaataaccgtcgacaaggtagt
taccaaaaatcgcgcccgcgcagctag
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