Pseudoalteromonas viridis: J5X90_06330
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Entry
J5X90_06330 CDS
T07232
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03420
Nucleotide excision repair
pvb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J5X90_06330 (uvrD)
03430 Mismatch repair
J5X90_06330 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvb03400
]
J5X90_06330 (uvrD)
Enzymes [BR:
pvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5X90_06330 (uvrD)
DNA repair and recombination proteins [BR:
pvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J5X90_06330 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
J5X90_06330 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
AAA_11
DUF3553
DEAD
Motif
Other DBs
NCBI-ProteinID:
QTL36645
LinkDB
All DBs
Position
1:complement(1498449..1500614)
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AA seq
721 aa
AA seq
DB search
MDVSELLDGLNDKQREAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVEHASAYSIFAV
TFTNKAAKEMRTRVEETLQNPVGGMWIGTFHGLAHRILRAHHREANLPESFQILDSDDQL
RMIKRLLKSMNIDDKKWPPKQLSWYISARKDEGQRPKDITAYDVNEQLMLQVYTAYQDAC
DRAGLVDFAEILLRCYEVLQQNPTLLRHYQQRFRHMLVDEFQDTNSIQYLWLKLLAGSDS
NIMIVGDDDQSIYGWRGARIENIKRFLTDFDAQTIRLEQNYRSTGTILKASNALIQNNAE
RMGKSLWTDGNQGEPISVYAAFNELDEARFMVSKVKSWLQGGNALSDCAVLYRSNAQSRV
LEEALLQEGLKYRIYGGMRFFERQEIKDALSYLRLISNRNDDAAFERVINTPARGIGDKT
LSHIRDCARAESLPLWYAAKAVLEQGHLAGRAATAIRRFIELVEQLDDKLMELELAEQAK
TTIELSGLLAMYQAEKGEKGRARVENLEELINACGQFELPVEEEFTSPLQGFLAYTSLES
GEGQADEHEDAVQMMTLHSAKGLEFPLVFMVGVEEGMFPSQQSHEESGRLEEERRLCYVG
MTRAMEKLYISHAESRRLYGQEKYHSPSRFLREIPEDCLEEIRIKTQVSRPAPSGRFSGS
VSHAAFEDSGFSLGQRVLHAKFGAGTVLNYEGSGAQSRIQVNFDDVGSKWLVTAYARLQA
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcagaattacttgatggcttaaacgacaaacaacgtgaagcggtggctgca
ccgctgcaaaatatgctggttttggcgggcgcaggctcgggcaaaacccgggtgctggtg
catcgcatcgcctggctgatgcaggttgagcatgcctcggcgtacagtatttttgccgtg
acctttaccaacaaagccgccaaagagatgcgtacccgggtcgaagagaccttgcaaaat
ccggtcggtggcatgtggatcggcactttccatggactcgcccatcgtatcttgcgcgcc
catcatcgcgaggccaatctgccagagtcgtttcagatattggattccgacgatcagctg
agaatgatcaaacgcctgctgaagtcgatgaacatcgatgataaaaagtggccacccaaa
cagctcagctggtatatcagtgcacgcaaagacgaaggtcagcgccccaaagacatcacc
gcctatgacgtcaacgaacaactgatgttacaggtgtataccgcctatcaggacgcctgc
gatcgcgccggcctggtcgactttgccgaaattttgctgcgctgctacgaagtactgcag
caaaaccccacgctactgcgccattaccagcaacgcttccgccatatgctggtcgacgaa
ttccaggataccaacagcattcagtatttgtggttaaagctgctggcgggcagcgacagc
aacattatgatcgtaggcgatgacgaccagagtatttatggctggcgcggtgcgcgtatt
gaaaacatcaaacgctttttgaccgactttgacgcgcaaaccattcgtctggaacaaaac
tatcgctctaccggcaccatactgaaagcctccaatgcgctgatccagaacaacgctgag
cgcatgggtaagagcctctggaccgatggtaatcagggcgagcctatctccgtctatgcg
gcgtttaacgaactggatgaagcgcgctttatggtcagtaaagtgaaatcctggctgcag
ggcggcaacgcactgagcgattgcgccgtgctttatcgcagtaatgcccagtcgcgggtg
ctggaagaagcgctgttacaggaaggtctgaagtaccgaatttacggtggtatgcgcttc
ttcgaacgtcaggagatcaaagatgccctgtcctatctgcgcctgatcagcaatcgcaac
gacgatgcggcctttgagcgggtgatcaacacccccgcccgtggcattggcgacaaaacc
ctgagccatatccgcgactgtgcccgcgctgagtcgctgcccctgtggtatgccgccaaa
gcggtgctggaacagggccacctggccggacgcgccgccaccgccattcgccgttttatt
gaattagttgaacagctcgacgacaagctgatggaactggagctggccgagcaagccaaa
accaccatagaactgtcgggtctgctggccatgtatcaggccgaaaaaggcgaaaaaggc
cgtgcccgggtagaaaaccttgaggaattgatcaacgcctgcggtcagtttgaattgccg
gttgaagaagaattcacctcaccactgcaagggtttttggcgtatacctcgctggagtct
ggcgagggtcaggccgacgaacacgaagatgcggtacagatgatgacgctgcattcggcc
aagggcctggagttcccactggtctttatggtgggcgtagaagaaggtatgttcccgtca
caacaaagccatgaagaatcaggtcgtctcgaagaagaacgccgcctgtgttacgtgggc
atgacccgggcaatggaaaagctctatatcagtcatgcggaaagccgccgcctctatggt
caggaaaaataccacagcccgtcgcgctttttacgcgagatccccgaagactgtctggaa
gaaattcgcattaagacgcaagtgtcacgcccagcccccagtggtcgtttcagcggctcg
gtgagccatgccgcgtttgaagacagcggcttcagcctgggccagcgcgtattgcatgcc
aaatttggtgccggcacggtgctcaattacgaaggcagcggcgcacagtcacgtattcag
gtgaattttgacgatgtcggcagcaagtggctggtcactgcctatgccagactgcaagca
ctctaa
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