Pseudoalteromonas viridis: J5X90_07040
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Entry
J5X90_07040 CDS
T07232
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J5X90_07040 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvb03021
]
J5X90_07040 (rpoC)
03400 DNA repair and recombination proteins [BR:
pvb03400
]
J5X90_07040 (rpoC)
Enzymes [BR:
pvb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J5X90_07040 (rpoC)
Transcription machinery [BR:
pvb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J5X90_07040 (rpoC)
DNA repair and recombination proteins [BR:
pvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J5X90_07040 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QTL36773
LinkDB
All DBs
Position
1:1654176..1658357
Genome browser
AA seq
1393 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDAIRIGLASPDMVRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLGEEEYLDALEEHGDEFEAKM
GAEAVLDLLRDLDLGQLIAEMREELPTINSETKRKKITKRLKLMEAFHQSGNNPEWMVMS
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGKLERRGMATTIKAAKKMVEREVPEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRINAKGEGIVFKDAKEAEKAYRTG
AAELHARVKVRIAEVHIDGETGERKDVTEVVETTVGRAILSLILPTGLPFELINRALGKK
QISGLLNECYRRLGLKDTVIFADQVMYTGFHYAMKSGVSIGINDMEIPPTKAGIIEAAEA
EVTEINQQFQSGLVTAGEKYNKVIDIWSRVNENLSREMMANLSKDTVVNAKGEEEEQDSF
NSVFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVINETDCGTLEGTVMKPLIEGGDVVEPLRERV
LGRVVAEDVVIPGTEEVLVERNVMLDEKLCDLLEEHSVDEVKVRSVITCENDFGVCANCY
GRDLARGHIINAGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNNGSMK
LHNAKFVINTDGKIVITSRSTEITVIDEQGREKERYKVPYGAVLAVSDGAEVKGNDIVAT
WDPHSHPIIIEHESKVSFSDIDDSNTEAQTDELTGLTRVVVKDLAKVNAKEPKLIIENEE
RGLQEIRLPSFTTIEITDGATAQPGDVLARIPQEGSKTRDITGGLPRVADLFEARKPKDP
AILAEITGTVSFGKETKGKKRLVITPEEGDAYEEMIPKWRQLNVFEGEQVSKGEVIADGP
ESPHDILRLRGVTDVSNYIVNEVQEVYRLQGVKINDKHIETIIRQMLRKCIIIDGGDSEF
LAGEQAEVARVNIANRELEKQGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTE
AAVNGKSDELRGLKENVIVGRLIPAGTGFSYHLDRINRRKQNEAAVEEQTVSAEEASQAL
TDALNADLLGGQD
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaagcaacaaaataagaccgaagaattcgatgcaatt
cgcattggtcttgcttcgccggacatggtgcgttcatggtcctatggtgaggtaaagaaa
cctgagacaattaactaccgtactttcaagcctgagcgtgacggcttattctgtgcccgt
atcttcggcccagtaaaagattatgagtgtttgtgtggtaagtacaagcgcttgaagcac
cgtggtgtgatctgtgaaaagtgtggcgttgaagttacactgactaaagtacgccgtgac
cgcatgggtcacattgaactggccagcccagttgcccacatttggttcctaaaatcattg
ccgtctcgtattggcctgatgctggacatgacgctacgtgacatcgagcgtgtactttac
ttcgaatcattcgttgtaactgaacctggcatgacaacgcttgagcgtggtcagctgtta
ggtgaagaagagtacctggatgcactggaagagcatggtgacgagttcgaagcgaagatg
ggtgccgaagcggtacttgatctgctgcgcgacctggacctgggtcaactgatcgctgaa
atgcgtgaagagctgccaactatcaactctgaaactaagcgcaagaagattactaagcgt
cttaagttgatggaagcgttccaccagtcaggtaacaaccctgagtggatggtaatgagc
gtactgccagttctgccacctgatctacgtccattggtaccactggatggtggtcgtttc
gcgacgtctgatctgaacgatttataccgtcgtgttatcaaccgtaacaaccgtcttaag
cgtctacttgacctggcggcacctgacatcatcgtacgtaacgaaaagcgtatgttgcaa
gaagcggtcgatgcactactagataacggtcgtcgtggccgtgcgatcacaggttctaac
aagcgtcctctgaagtcgcttgcagacatgatcaaaggtaagcaaggtcgtttccgtcag
aaccttcttggtaagcgtgttgactactctggccgttctgtaatcacagtaggtcctaca
ctgaaactacatcagtgtggtctgcctaagaaaatggcacttgagctgttcaagccattc
atctacggcaaactagagcgccgcggcatggcgactaccatcaaagctgcgaagaagatg
gtagagcgcgaagtaccagaggtttgggacgtacttgatgaagtgatccgtgaacacccg
gttcttctgaaccgtgcaccaacacttcacagacttggtatccaggcgtttgaaccggta
ctaatcgaaggtaaagcaatccacctgcacccgctagtgtgtgcggcgtataacgctgac
ttcgacggtgaccaaatggcggtacacgtaccgttgacactggaagcacagcttgaagct
cgtgcgctgatgatgtcgaccaacaacattctgtctcctgcgaacggtgagccaatcatc
gtaccttcacaggacgttgtattgggtctgtactacatgacacgtgaccgcatcaatgca
aaaggtgaaggcattgtcttcaaagatgcgaaagaagctgaaaaagcttaccgtactggc
gcggctgaactacacgcacgcgtaaaagtacgtatcgcagaagtccacattgatggcgaa
acaggtgagcgtaaagacgtaactgaagtggttgaaaccacagttggtcgtgccatcctg
tctttgatcttgccaactggcctgccgtttgagcttatcaaccgtgcgctgggtaaaaag
cagatctctggcctgttgaacgagtgttaccgtcgtctgggtctgaaagataccgttatc
tttgctgaccaggtgatgtacaccggtttccactacgcgatgaagtcgggtgtttctatc
ggtatcaacgatatggaaatcccaccgacgaaagcaggtatcatcgaagcggctgaagct
gaagttacagaaatcaaccagcaattccagtctggtcttgtaactgcgggtgagaaatac
aacaaagttatcgatatctggtcacgtgttaatgaaaacttgtcacgtgagatgatggcg
aacttgtcgaaagacactgttgtgaatgcaaagggtgaagaggaagagcaagactctttc
aactcagtgttcatgatggccgactcgggcgcacgtggtagtgctgctcagatccgtcag
ctagctggtatgcgtggtctgatggcacgtccggatggttcaatcatcgaaacaccgatc
accgcgaacttccgtgaaggtctgaacgtactacagtacttcatctcaacgcacggtgcg
cgtaaaggtctagcggataccgcacttaagacagcgaactcgggttacctgactcgtcgt
ctggtagacgtagcacaagatttggtcatcaacgaaactgattgtggtacccttgaaggt
actgtgatgaagccactgattgaaggtggtgacgttgtagaaccgctacgcgagcgtgta
ctaggtcgtgttgttgctgaagacgtggttatccctggcactgaagaagtgctggttgaa
cgtaacgtgatgcttgatgagaagctgtgtgacctgttagaagagcactcagtggacgaa
gtaaaagtacgttcagttatcacctgtgaaaatgactttggtgtgtgtgctaactgttac
ggtcgtgaccttgcacgtggccacatcatcaacgcgggtgagtctgttggtgttatcgcg
gcacagtcaatcggtgagccgggtacccagcttacgatgcgtaccttccacatcggtggt
gcggcatctcgagcgtctgcagaaaacagcgtacaggttaagaacaacggtagcatgaag
ctgcacaatgcgaagttcgtaatcaataccgacggtaagatagtgatcacctcacgttca
accgaaattacggttattgacgagcagggccgtgagaaagagcgctataaagtgccttac
ggtgccgtattggcagtgagtgacggtgcagaagtaaaaggtaacgacattgtcgcgacc
tgggacccgcacagtcacccaatcatcatcgagcacgagtctaaagtatcgttcagcgac
atcgacgattctaacacagaagcacagacagacgagttaactggtctgacgcgtgtggtt
gttaaagaccttgctaaggtgaatgcgaaagagcctaagcttatcattgaaaatgaagag
cgtggcctgcaagaaattcgcctgccttcgttcactaccatcgaaatcacagatggtgct
acggctcagccgggtgacgtactggcacgtattcctcaggaaggttcgaagacacgtgat
atcacgggtggtctacctcgagttgctgacttgttcgaagcgcgtaagccaaaagatcca
gcaatcctggcagaaatcacaggtaccgttagctttggtaaagaaaccaaaggtaagaag
cgcctggtgatcacgccggaagagggtgatgcatacgaagaaatgatcccgaaatggcgt
cagctgaacgtgttcgagggtgagcaggtatccaaaggtgaagttatcgccgatggtcct
gagtctccgcacgacatcttacgtctgcgtggtgtgactgacgtatctaactacatcgta
aacgaagtacaagaagtatatcgtctacagggtgtaaagattaacgataagcacatcgaa
accatcattcgtcagatgctacgtaaatgtatcatcatcgatggtggtgacagtgagttc
ctggcaggcgagcaagccgaagtggcgcgcgttaacatcgcaaaccgtgagctagagaaa
caaggtaagatcccagctaagttcgaaattcagctgatgggtattaccaaagcctcactg
gcaacagagtctttcatctctgcagcctcgttccaggagacaacacgtgtcctgactgaa
gcggcagtaaatggtaagagtgatgagctacgtggtctgaaagaaaacgttatcgtgggt
cgtttgatcccagcgggtaccggtttctcttaccacctagatcgcatcaaccgtcgtaag
caaaatgaagctgcagttgaagagcaaacagtaagtgctgaagaagcatctcaagcactg
actgacgcactaaatgcagacttgcttggcggccaagactaa
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integrated database retrieval system
