Pseudoalteromonas viridis: J5X90_08440
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Entry
J5X90_08440 CDS
T07232
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J5X90_08440 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvb03021
]
J5X90_08440 (rpoD)
Transcription machinery [BR:
pvb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J5X90_08440 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
HTH_Tnp_Mu_2
Motif
Other DBs
NCBI-ProteinID:
QTL37036
LinkDB
All DBs
Position
1:complement(1967373..1969217)
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AA seq
614 aa
AA seq
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MDQTPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDIIDSDQVEDIISMINDMGIQVAESAP
DADELMMQETTTDEDAAEAAAAALATVEKEIGRTTDPVRMYMREMGTVELLTREGEIQIA
KRIEEGINQVQISVAEYPEAITYLLEQWDKYEAEEMRLSDIVSGFFDSLEDDEAPISATH
IGSELSEEDLDDEDDDGDEDDDDSEDADTGPDPEIAREHFEELRTLYINARKCFEVKGRA
HPDSQAAIAEIGELFRKFKLVPKQFDRMVNNMRDMMDRVRVQERIIMKQAVQIAKLPKKT
FIKHFANNETDMAWVDAEIAAGDKHSAKLAEVKPEIERCVNKLSAIEESTGLSIERIKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPE
ELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIESPVDSATMESLR
GATNEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSDLLKSFLDVKG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaactcctcagtcacaactcaaacttctgattcagaaaggtaaagagcaaggt
tacttaacttttgcagaagttaacgatcaccttccacaagacatcatagattcggatcaa
gtagaagatatcattagcatgatcaatgatatgggtatccaggtagcagaatctgcgccg
gatgccgatgaactgatgatgcaggaaaccacgaccgacgaggatgcagccgaagccgcg
gctgccgcattggcaacggtagaaaaagagatcggcagaaccacagacccagtgcgtatg
tatatgcgcgaaatgggtacggttgagctgctgacgcgcgaaggtgaaattcagatcgcc
aaacgcatcgaagagggaattaatcaggtacagatctcggttgccgagtaccctgaagcc
attacctacttgcttgaacaatgggacaaatacgaagccgaagagatgcgcctgagcgac
atcgtctctggtttcttcgactcgttagaagacgatgaagcccctatttcagcgactcac
attggttctgagctcagcgaagaagacctcgatgatgaagacgatgatggcgatgaagac
gacgacgattcggaagacgcagatacaggtccggatcctgaaattgcgcgcgagcacttc
gaagaattaagaaccctttacatcaacgctcgtaagtgttttgaagtaaagggccgtgca
cacccggattcacaagcagcgattgccgaaattggcgagctgttccgtaaatttaaactt
gtgccaaaacagtttgaccgcatggttaacaacatgcgtgacatgatggaccgcgttcgt
gttcaggaacgtatcatcatgaagcaagcggtacagattgcaaagctaccgaagaaaacc
ttcatcaagcactttgcaaacaacgaaacggatatggcctgggtcgatgctgaaattgca
gcaggtgataagcactctgcaaaattagctgaagtaaaaccagaaatcgaacgctgtgtg
aacaagctgagcgccatcgaggaaagcactggcctgagcattgaacgtattaaagacatc
aaccgtcgtatgagcattggtgaagccaaggcccgccgcgcgaaaaaagaaatggttgaa
gccaacttacgtctggttatttcaattgcgaaaaagtacaccaaccgtggcctgcaattt
ttggatctgatccaggaaggtaacattggtctgatgaaagccgttgataaattcgaatac
cgccgtggttataagttctcgacttatgcaacctggtggatccgtcaggctatcacccgc
tctatcgctgaccaggcacgcaccatccgtattccggtgcacatgattgaaacgatcaat
aagctgaatcgtatctctcgtcagatgctacaggaaatgggtcgtgagccaagcccggaa
gagctggctgagcgcatgatgatgccagaagataagatccgtaaagtgctgaaaattgcc
aaagagccaatctccatggagacgcctatcggtgatgatgaagattcgcatctgggtgat
ttcatcgaagacaccacgattgagtcgccggtggattcagcgacaatggaaagcctgcgc
ggcgcgaccaacgaagtacttgccggcctgacggctcgtgaagccaaagtactgcgcatg
cgttttggtatcgacatgaatactgaccatacgctggaagaagtgggtaaacagtttgac
gtaacccgtgagcgtattcgtcagattgaagcaaaggctttgcgtaagctgcgccatcca
tcacgctctgacttactgaagagcttcctggatgtgaaaggctaa
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