Pseudoalteromonas viridis: J5X90_11425
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Entry
J5X90_11425 CDS
T07232
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pvb
Pseudoalteromonas viridis
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvb03016
]
J5X90_11425 (truB)
Enzymes [BR:
pvb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
J5X90_11425 (truB)
Transfer RNA biogenesis [BR:
pvb03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
J5X90_11425 (truB)
Prokaryotic type
J5X90_11425 (truB)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
TruB_C
SutA-RBD
Motif
Other DBs
NCBI-ProteinID:
QTL34183
LinkDB
All DBs
Position
1:2607932..2608867
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AA seq
311 aa
AA seq
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MARRSKGRPIDGIVLLNKPQGISSNKALQQAKGIYFAQKAGHTGALDPLATGMLPICFGE
ATKFTQFLLDTDKTYVVRAKLGERTTTSDSDGEVVETRPVQITREQLEQDVASFLGESDQ
YPSMYSALKYQGQPLYKYAREGIEVPRKCRKINVYSITLDEYDEQAQEIQMTVHVSKGTY
IRTIVDDLGEKLGCGAHVIMLHRSEVGHYPSDKMITLEELEEKLQQAKAEDLPPSTYIDA
LLLPMDTALVDLPAVEISAEQGVAFSHGQTVVVGELPEGVLKVVADGRFVGIGERNQHGH
LKAKRALSSAQ
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtcgtagtaaaggccgtccaatagacgggattgtgctgctcaataagccgcag
gggatctcctccaataaagcgctgcaacaagccaaaggtatctactttgcgcaaaaagcc
ggccacacgggggcactcgatccgctggcaacgggcatgctgccaatctgttttggtgaa
gcgactaagtttacccagttcctgctggataccgataaaacttacgtcgtgcgtgccaaa
ttaggcgagcgtaccacgacctcggattctgatggcgaagtggttgaaacacgcccggtg
cagatcactcgcgagcagctagagcaggacgtcgccagcttcctgggagagtcggatcag
tatccgtcgatgtactcagcgctaaagtatcagggtcaacctttatacaagtacgcccgt
gaaggcatcgaggtgccgcgcaagtgtcgtaagatcaacgtctattcgatcaccttggat
gaatacgacgagcaggcgcaagagatccagatgacagtgcatgtctcaaaagggacttac
attcgtaccatagtggatgacttgggcgagaagcttggctgtggggcgcatgtcattatg
ctgcatcgctctgaagtaggccattatccgagtgataaaatgatcacgctggaagagctt
gaagaaaaacttcagcaggccaaagcagaagatttgccgccgtcgacttacatcgatgcg
ttgttactcccgatggacacggcgctggttgatttaccggcggtagagatcagtgcggag
cagggcgtggcattcagccacggtcaaacagtggtggttggcgagctgccagagggcgta
ctgaaagtcgtggctgatggtcgttttgtcggtattggcgagcgcaatcagcacggccat
ttaaaggccaagcgggccttatccagcgcacaataa
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