Pseudoalteromonas viridis: J5X90_12095
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Entry
J5X90_12095 CDS
T07232
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03030
DNA replication
pvb03430
Mismatch repair
pvb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J5X90_12095 (dnaE)
03430 Mismatch repair
J5X90_12095 (dnaE)
03440 Homologous recombination
J5X90_12095 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvb03032
]
J5X90_12095 (dnaE)
03400 DNA repair and recombination proteins [BR:
pvb03400
]
J5X90_12095 (dnaE)
Enzymes [BR:
pvb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J5X90_12095 (dnaE)
DNA replication proteins [BR:
pvb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J5X90_12095 (dnaE)
DNA repair and recombination proteins [BR:
pvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J5X90_12095 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
SPOUT_MTase
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QTL34305
LinkDB
All DBs
Position
1:2749991..2753482
Genome browser
AA seq
1163 aa
AA seq
DB search
MAAPEFVHLRVHSDFSMVDGLAKTKPIVARAAELGMPAFAITDQMNLCGLVRFYGTAHGA
GIKPLVGADFWLKSDQFPDEPSRIVVLAKNNEGYKNLTLLISEAYLRGHVFHRPVIDKAW
LAKYKEGLILLSGAKDGDVGKALLKGNPQLIADTVEFYETHFADHYYLELHRTGREQEEE
YLHAAVALATERGLPVVATNEVVFLHEHDFEPHEIRVAIHDGYTLEDKNRPRRFSKEQYL
KTPEQMQELFSDIPEALQNTVEIAKRCNVTVQLGTYFLPDYPTGDLKIEDFLVKVSRDGL
EERLQFLFPDDAERAEKRGPYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVSK
LYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPGDPGMTLAKAFEVEPR
LPEVYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTSITDFAALYCDEEGKFPVTQ
FDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLARDGIEPVDIAAIPLDDPASFEVL
LRAETTAVFQLESRGMKDLIRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDAQYQHESLQPILEPTYGIILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPEEM
AKQRSTFEDGARDNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHYPA
EFMAAVMSADMDNTDKIVTLVDECENMKLTLLPPDVNAGVYKFAVNRQGEIVYGIGAIKG
VGEGPVEAILEAREQGGPFKDLFDFCARVDLKRLNRRVIEKLIYAGALDQLGPEKTQPGR
ATLLASLKDAMKSAEQHHKAESLGQSDLFGLLAVEPDEVEQAFVKAVPLSDDEWLQGEKD
TLGLYLTGHPINQYRKELKNYTSGRLVELQPTNRDVQSTAAGLVINARVLVNKKGKRWGL
ITLDDKSARIDVRLFPEQFEMYQDMLQMNQILVISGQVSFDNFSGGITMTAREVCTIAQA
REKRISAIKMTLNMVQIDTNFIDNLKKVLEPYKFGTCPVKIQYQRPDAIAEVTLGMQWCV
TPSDDLLRRLSKMAAQEIELEFN
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggcagcacctgagtttgttcatttaagagtacacagcgacttttctatggtcgacggg
ctggcaaaaaccaagcccatcgtggcgcgcgccgccgagctgggcatgcccgcgtttgcc
atcaccgatcagatgaacttatgtggcctggtacgcttttacggcacggcccacggtgct
ggcattaagccgctggtcggggccgacttctggcttaagagcgatcagtttccggacgag
cccagccgcattgtggtactggccaaaaacaacgaagggtataaaaaccttaccttactg
atctccgaggcctatttacggggtcacgtatttcaccgccctgtgatagacaaagcgtgg
ctggccaaatacaaagaaggcctgatcttattgtccggtgccaaagacggcgacgtgggt
aaagcgctattgaaaggcaacccgcaactgattgccgacacggtggaattctacgaaacc
cactttgctgaccattattatcttgaactacaccgtacaggacgtgagcaggaagaagaa
tacctgcatgcagcagtcgcgctggcaacagaaagaggcttgccggtggtggcaaccaac
gaagtggtgttcctccatgaacacgacttcgaaccccacgaaattcgtgtggccatccac
gacggctacacgctggaagataaaaaccgtcccagacgcttctctaaagagcagtacctg
aaaacccctgaacaaatgcaggagctattcagtgatattccggaagcgctgcaaaacacg
gtagagattgccaaacgttgtaacgtcaccgttcagctgggcacgtacttcctgccagat
tatccgaccggcgatttaaaaatcgaagacttcctggtgaaggtatcccgagatggtctg
gaagagcgtttacagttcctattcccggacgatgctgagcgcgcagaaaaacgcggtccg
tatgatgagcgtctgcaaattgagctcgacgtaatcaaccagatgggattcccgggctac
ttcctgatcgtaatggagttcattcagtggagtaaggataacgatattccggtagggccg
ggacggggttccggtgcgggctcactggtggcgtatgcgttaaaaattaccgacctggac
ccgctggaatttgacctgcttttcgaacgtttccttaacccggaacgtgtttcgatgccc
gacttcgacgtcgacttctgtatggaccgccgggatgaagtaatcgaccacgtatctaag
ctgtatggtcgtcaggcggtctctcagatcatcacctttggtaccatggccgccaaggcg
gttatccgggatgtagggcgagtgcttggtcacccttatggttttgtcgaccgcatttct
aaactcgtcccgggcgatccgggtatgaccctggccaaagcctttgaggtggagccgcgt
ttacccgaagtgtacgacggcgatgaagaagttcgagagctgatagacaagtgtcgtatt
cttgaaggttgtacccgtaacgccggtaagcacgccgggggcgtggttatctcgcccacc
agtatcaccgactttgccgcgctgtattgcgatgaagaaggtaagtttccggtcacccag
tttgataaaaacgacgttgaaacggccggtctggttaaattcgacttcctgggtctgcgt
acactgactatcctgcagtgggcgctcgatatgaccaacgagcgactggcgcgcgatggc
attgagccggtcgatattgctgccattccattggatgatccggccagttttgaagtgctg
ctcagagccgaaaccaccgcggtattccagctggaatcgcgggggatgaaagacttgatc
cgtcgcctgaagccggactgcttcgaagatatgatcgcacttgtagccttgttccgtccg
ggtccgctgcaatcgggcatggtagataactttatcgaccgtaagcatggccgcgaagag
atctcttacccggatgcacagtatcagcacgagagtctgcaacctatcctggagcccact
tacgggatcatcctgtatcaggagcaggtaatgcagatagcccaggtcctggcagggtat
agcctgggtggcgcagacttgctgcgtcgagccatgggtaagaaaaagcccgaggaaatg
gccaagcagcgtagcaccttcgaagacggtgccagagacaacggcgttgacggcgaactg
gcaatgaagatcttcgatctggtagagaagttcgcgggttacggctttaacaagtcacac
tctgctgcatatgcactggtatcatatcagacgctgtggatgaagacccattatccggcc
gagtttatggcggcggttatgtcggcggatatggataacaccgataaaatcgtgaccctg
gtcgatgaatgcgaaaacatgaagttgacgctgctgccaccggacgttaacgcgggtgtg
tataagtttgcggtaaaccgccagggcgaaatcgtctatggtatcggtgctattaaaggc
gtaggtgaaggcccggttgaagccattctggaagcccgtgagcagggcggcccgtttaaa
gacttattcgatttttgtgcccgggttgaccttaaacgcctgaaccgcagggtgattgaa
aaactgatttacgcaggcgcgctggaccagctgggtccggagaaaacccagccagggcgt
gccaccttattggctagcctgaaagacgccatgaagtctgctgagcaacaccataaggcc
gagtcactggggcaaagcgatttgtttggcctgctggccgttgagccagacgaagttgag
caggcatttgttaaagcggtcccgttgtcggatgatgaatggttgcagggtgaaaaagac
accctgggcttgtatctgaccggtcatccgatcaatcagtacagaaaagagttaaaaaac
tacacttctggtcgtctagtagaactacagccgacgaatcgcgatgtgcaatcgacggct
gccggattggttatcaatgcaagggtactggtcaacaaaaaaggcaagcgttggggtctg
ataactttagatgacaagagcgcacgaattgatgtacgcttattccctgaacagtttgaa
atgtaccaagatatgctgcaaatgaaccaaatcttggtaatatccggacaggtcagcttt
gataacttctccggcggcattacaatgaccgccagagaagtctgcaccatagctcaggcc
cgcgaaaagcggatcagtgcgataaaaatgaccctgaatatggtgcaaattgacacgaac
ttcatagataatctgaaaaaagtactggaaccgtacaaattcggtacatgtccggtcaaa
atccaatatcagcgcccggacgcgatagcggaagtgacattaggtatgcaatggtgtgtg
acgcccagtgatgatctcctcagacgattatccaagatggcggcgcaggaaatagaacta
gaatttaattaa
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