KEGG   Pseudoalteromonas viridis: J5X90_16465
Entry
J5X90_16465       CDS       T07232                                 
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
  KO
K02341  DNA polymerase III subunit delta' [EC:2.7.7.7]
Organism
pvb  Pseudoalteromonas viridis
Pathway
pvb03030  DNA replication
pvb03430  Mismatch repair
pvb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pvb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    J5X90_16465 (holB)
   03430 Mismatch repair
    J5X90_16465 (holB)
   03440 Homologous recombination
    J5X90_16465 (holB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pvb03032]
    J5X90_16465 (holB)
   03400 DNA repair and recombination proteins [BR:pvb03400]
    J5X90_16465 (holB)
Enzymes [BR:pvb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     J5X90_16465 (holB)
DNA replication proteins [BR:pvb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     J5X90_16465 (holB)
DNA repair and recombination proteins [BR:pvb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     J5X90_16465 (holB)
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA_5 AAA KAP_NTPase DUF835 AAA_16 DUF1778 AAA_2 AAA_18
Other DBs
NCBI-ProteinID: QTL35101
LinkDB
Position
1:complement(3752426..3753331)
AA seq 301 aa
MYPWLESVFTQLQTSYQQQRFHHAQMLYGMVGVGKLEFAHTLAAALLCKQAGTSLVACGQ
CKSCLLLEADNHPDKLLIAAESQSISVDAIRSLNDFIFHSAQQGGNKVVVIDGIEKLTES
AANALLKTLEEPAKGRYLLLLCNDTARVTATVLSRCNKMNVAVVDGRGVEQWLAEQGVHT
GQYPWVSQFISQPLLLLRWAQAQQLGDIDALWQQAQRLGEGVNSETLSKALQADTSLIKI
FCGFAVAVINAKMASGQLDFIKAQAAITSIRRFSVDQQTVLGLNLSLSLSRLCYQLQQTL
S
NT seq 906 nt   +upstreamnt  +downstreamnt
atgtatccttggctagaatcggtttttacccaattgcagaccagttatcagcaacagcgt
ttccatcatgcgcagatgttgtatggtatggtgggagtgggaaaactggagtttgcacac
acgctcgctgcggcactgctatgtaagcaagcaggcacatcactggttgcctgcgggcaa
tgcaaaagctgtttgttactggaagccgacaaccatcccgataagctactgatcgccgct
gagtctcagagcatcagtgttgatgcgatacgtagtctaaacgactttatctttcactca
gcgcagcagggtggcaataaagtggtggtgatcgatggcatagaaaaactcaccgagtct
gcggccaatgcattactaaaaaccctggaagagcccgccaaaggccgatatttactgcta
ctgtgtaatgatactgcccgcgttacggccaccgtgttgagccgctgcaataagatgaat
gtggcggtagttgatggcagaggggttgagcaatggctagcagagcagggtgtccatacc
gggcaatatccctgggtcagtcagtttatctcgcagccgctactcttgctcaggtgggcg
caggcacaacagctgggtgatatcgatgctttgtggcagcaggcgcagcgtcttggagaa
ggggtaaatagcgagacattgagcaaggctttgcaggcagacactagcctgatcaaaata
ttttgcgggtttgccgtggccgtcatcaacgctaaaatggcatcgggacagctggatttc
atcaaagcgcaggcggctatcaccagcataaggcggttttcagtagaccagcaaactgtg
ttaggcttaaacttgtccctgagtctgtcacgattgtgctatcagttgcagcaaacctta
agttag

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