Pseudoalteromonas viridis: J5X90_17210
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Entry
J5X90_17210 CDS
T07232
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
J5X90_17210 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvb03400
]
J5X90_17210 (recD)
Enzymes [BR:
pvb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
J5X90_17210 (recD)
DNA repair and recombination proteins [BR:
pvb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
J5X90_17210 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
SH3_13
AAA_22
Helicase_RecD
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
PIF1
UvrD_C
FtsK_SpoIIIE
T2SSE
NTPase_1
AAA_28
TrwB_AAD_bind
Mg_chelatase
NPHP3_N
AAA
SRP54
Motif
Other DBs
NCBI-ProteinID:
QTL35237
LinkDB
All DBs
Position
1:complement(3919719..3921635)
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AA seq
638 aa
AA seq
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MMQDMFEFPAEELDHQAYIALLIHTRRVRAADVALAKLLCQGQYDAVFYLVLLLQRAEQS
QHTCLLLAEIDWQNPFSLNTDDMSAGSDTVPEAQRLPYTPFNNPDMALAALNSHPAVGEG
RPLRLFAGRLYLGRLADYEAYLSDRFRQMAEQPIQQDAGQLSALLDQYFPDDNAQDIDWQ
KVACAMAASSGFCVITGGPGTGKTTTVTKLLAILQSLYTAAPLSIKLVAPTGKAAARLSE
SIIGAKGRLSLPPELATLIPEQAQTIHRLLGVIPNTNRFIHHQQNPLHIDLLIVDEASMV
DLALMNKLVRALPPQARLILLGDKDQLASVDTGSILGDLCGHLKLGTQPAYTMNRASFLN
QVCFAGRDVLKGKASRYALADATAFLQQSHRFKSDSGIGQLASAVNNNDPQQLQQVINHG
FSDLSFYGLGVDQYNALLGRAADHYSRYLEAIHNHSEPEEVHALFSQYQLLAAVREGPYG
VAELNKRIEQKLAQRRLVAPYSRFYAGMPIMITQNDYQLKLFNGDIGILLPDAQGQLYAT
FIDEQSTVRYFYPVRLPSFELVYAMTIHKSQGSEFDYTALILPPIQRAGKGVNRQLVYTG
ITRAKQHLELNCQPQVLQLSMQTEAGRQSGMAHRLHLG
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaggacatgtttgaattcccggcagaggagctggatcatcaggcctatattgcc
ttactgatccacacccgacgtgtgcgagccgccgatgtggcgctggcaaagcttttgtgc
caggggcagtatgacgcggtattttaccttgtcttactgttgcaaagggcggaacaaagt
cagcacacttgtttgctactggctgagattgactggcagaatccattttctttaaacacg
gacgatatgagtgccggttcggacacagtgccagaggctcagcgtttgccatacaccccg
tttaataaccctgacatggcgctggcagcattgaattcgcatccggcggtgggtgaaggg
cggccgctgcggctatttgccgggcgattatatctggggcgtctggcggactatgaagct
tacctgagtgatcgttttcggcagatggcagagcaaccgatacaacaagatgcagggcaa
ttgagtgctttgctggaccagtattttccggacgacaacgctcaggacatagattggcaa
aaggttgcctgtgccatggctgcatccagcgggttttgtgtgatcaccggaggccccggc
actggcaaaaccacaacggtgaccaagttactggcgattttacagtccctgtatacggct
gcaccactgagtattaagctggtggcgccgacaggcaaagcagcagccagactcagcgag
tctatcattggtgcgaaagggcggctgtcgctgccgcccgagttggcaacgcttattccg
gagcaagcccaaaccattcaccgtttgcttggtgtgatcccgaacaccaaccgctttatt
catcatcagcaaaacccgctgcatatcgatttgttgatagtggatgaagcctctatggtt
gacctagcgctgatgaataaactggtcagggcgctgccgccgcaggccagactgatcctg
ctgggtgataaagaccaactcgcatcggttgataccggcagtatattgggtgacttatgt
ggtcatcttaaactcggtacacagccagcatataccatgaatcgtgcgtcttttttaaat
caggtctgttttgccgggcgtgacgtgctaaagggcaaagcaagccgttatgcactggcc
gatgccacggcatttttgcagcaaagtcatcgctttaaaagtgatagcggcattggtcaa
ctggccagtgcggttaataacaacgatccacagcagctgcaacaggtgatcaatcacgga
ttcagcgatctgagtttttacggactgggtgtggatcaatataacgccttgcttggccgg
gcggcggatcactacagccgatacctggaggctatccacaatcacagtgagcccgaagag
gtgcacgcgttattcagtcagtaccagctgcttgcagcggtcagagaagggccttatggc
gtcgcagagctcaataagcgtatcgagcagaaacttgctcagcgcaggctggtcgcccca
tatagccgcttttacgccggaatgccgattatgatcacgcaaaatgattaccagcttaaa
ctgtttaatggcgatattggcattttattacctgatgcacagggccagctttatgcaact
tttattgatgagcaaagcacagtgcgatatttttatcccgtaaggctacccagttttgag
ctggtgtatgccatgactatccataagtctcagggctcggagtttgattatacggcattg
attttgcctccaatccagcgcgccggtaaaggtgtgaaccgtcagctggtttacacaggc
attacgcgtgcaaagcaacacctggagcttaattgccagccgcaagtgttgcaattatcc
atgcaaacggaggccggaagacaatcaggaatggcccacaggttacacttgggttaa
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