Pseudoalteromonas viridis: J5X90_18045
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Entry
J5X90_18045 CDS
T07232
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5X90_18045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvb03019
]
J5X90_18045
03009 Ribosome biogenesis [BR:
pvb03009
]
J5X90_18045
Enzymes [BR:
pvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J5X90_18045
Messenger RNA biogenesis [BR:
pvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J5X90_18045
Ribosome biogenesis [BR:
pvb03009
]
Prokaryotic type
rRNA helicases
J5X90_18045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QTL35385
LinkDB
All DBs
Position
1:4088200..4090044
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AA seq
614 aa
AA seq
DB search
MSEPVTFESLDLSPAILKAVEELGYQSPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNVDASVKQPQILVLTPTRELALQVAEAFNQYAKYTKGVEVLALYGGQSYGVQLSA
LRRGAQIIVATPGRLIDHINRKTIDLSDLKALVLDEADEMLRMGFIDDVESIMEKTPVEK
QTCLFSATMPKQIQSICSKYLDNAEQVKITPRNSTVDTIEQVYWRATTHKNKAIVRFLEA
EDYDASIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGLLDIVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRKGKAILFVKGNERYLLRNIMR
HTRSDIEQVELPNAKVVEQKRIEALQGKLSLALDHKDIEFFSEVAQGMAEKLELSQTELS
AALLCLAQQQSPLKVQEIQVQRERRERDGNRDGNRERRGERGERKGNARRNTGPMDTYRI
EVGREHGVQVKNIVGAIANEADISSKFIGEIRLFDEHSTVQLPQDMPADTLSHFQSVYIC
QRPMKMTKSTHPADQGNGGERRGGERRSGGRDERRFEGRNERGEGRGDRKRSFKDPRGDK
RDNKRKERGEISFS
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctttagatctttctcctgcaattttaaaggcagtc
gaagagctgggatatcaatcaccttctgagatccaggctcaatgtataccgttattgcta
gaaagaaaggacgtgctgggactagcgcagacgggtacgggcaaaacggcggcgttcgcg
ttgccgctattaaacaatgttgacgcatccgttaagcaaccacagatattagtattgact
ccaacacgcgaactggctttacaggtcgcggaagccttcaaccaatacgctaaatacacc
aaaggtgttgaagtattggctctgtacggcggacaaagctatggcgtgcagctaagtgca
ctgcgccgtggcgcacagatcattgtggcaacaccgggtcgtttgattgaccatattaac
cgtaagaccattgatttgtcggatctgaaagccctagtgctggacgaggccgatgaaatg
ctacgcatgggctttatcgatgatgttgagagcatcatggaaaaaacaccagtagagaag
caaacctgtttgttctctgcaaccatgccaaagcagatccaatctatttgttctaagtat
ttagataacgcagagcaagtaaaaatcacgccacgtaactcaactgttgacacaattgag
caagtttactggcgtgcaacgacgcataaaaacaaagccatcgtacgcttcttagaagcg
gaagattacgatgcgtctatcgtgtttgtgcgtactcgtaacgacaccgttcagctggct
gaactacttgagcgcgaaggcttctctgcggcaccactgaatggtgacatgaaccagcaa
gcccgtgagcgcacagtagagcgtctgaaaagcggtctgttagacatcgtaatcgcaact
gacgttgcagcacgtggtctggacgtagatcgtctgagcctggttatcaactatgatatc
ccgcaagacagcgaagcctatgtacaccgtatcggccgtactggtcgtgctggtcgtaaa
ggtaaagctatcctgttcgtgaaaggtaatgaacgttacctgctacgtaacatcatgcgt
catacccgctctgacatcgagcaggttgaactgcctaacgcaaaagtcgttgagcaaaag
cgcattgaagcactacaaggcaagctaagcctggcgcttgatcacaaagacatcgagttc
ttcagtgaagtagcacagggcatggctgaaaagctggaactgagccaaactgagttgtct
gctgcacttctgtgcctggcacagcagcagtcgccgctgaaagttcaggaaattcaggtg
caacgtgaacgtcgcgaacgcgatggtaaccgtgacggaaaccgcgagcgtcgtggtgaa
cgtggtgaacgcaaaggcaatgcacgtcgcaacaccggtcctatggatacctatcgtatc
gaagtcggtcgtgagcacggcgtacaggtcaagaacattgttggtgcgattgctaacgaa
gctgatatctcaagcaagtttatcggtgagatccgtttgtttgatgaacacagcactgtt
cagctgcctcaggatatgccagcagatacgctgtcacacttccagagcgtttacatttgt
cagcgcccaatgaagatgaccaagagcacgcaccctgccgatcagggcaatggtggcgag
cgtcgcggcggtgaacgtcgttcaggcggtcgtgatgagcgtcgctttgaaggccgtaac
gaacgtggtgaaggccgtggtgaccgcaagcgcagcttcaaagatccacgtggtgacaag
cgtgacaataagcgcaaagagcgcggcgagatcagcttttcataa
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