Pseudoalteromonas viridis: J5X90_18525
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Entry
J5X90_18525 CDS
T07232
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03030
DNA replication
pvb03430
Mismatch repair
pvb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J5X90_18525 (holA)
03430 Mismatch repair
J5X90_18525 (holA)
03440 Homologous recombination
J5X90_18525 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvb03032
]
J5X90_18525 (holA)
03400 DNA repair and recombination proteins [BR:
pvb03400
]
J5X90_18525 (holA)
Enzymes [BR:
pvb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J5X90_18525 (holA)
DNA replication proteins [BR:
pvb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J5X90_18525 (holA)
DNA repair and recombination proteins [BR:
pvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J5X90_18525 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
QTL35478
LinkDB
All DBs
Position
1:4218583..4219620
Genome browser
AA seq
345 aa
AA seq
DB search
MRCYANQLAGQLKQGLQPFYLIFGEEPFQEAQCVSAVRQVAKRQGFDEVIKFSLLPGFDW
LELVNQYNSMSLFSAQTLIEFDLNQQKPPTQGVNILKELAANPNPDVILILKGAKASQDI
QRSAWFKALDKQGLFVPCYALTGYHLQRWLDDECKRLKLNLNNDAKRSLLQATEGNLLAT
HQELEKLSLLYKSAPIDQEKLLSGLLNQAKFDIFDLNDGLLRGNPKTLIKVLNKLAHDNV
EPASIAWTLHNQAQLLLNLKQLIQSGTPTQDAFKKHNVWKNQQQNTQQALDRLNTTQLEQ
LLVLLAEFDSAYKRNILVAPYQALAHIALSFCQSLPFALPYEELA
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgcgttgttatgccaatcaattagcaggccagcttaaacagggcctgcaaccattttat
ctgatttttggtgaagagcctttccaggaagcccagtgcgtcagcgccgtgcgccaggtg
gctaagcgccagggatttgatgaagtgattaaattcagcttactgcccggctttgactgg
ctggagctggtcaatcagtacaatagtatgtcgctgttcagcgctcagacgctgatcgaa
ttcgaccttaaccagcaaaaaccgcccacccagggcgtgaacattttaaaagagctggcg
gcaaacccgaacccggatgtgatattaatcctcaaaggcgctaaagcctcgcaggatatt
cagcgcagtgcctggtttaaggcgctggataagcaaggcctgtttgtgccctgctacgcg
ctgaccggctaccatctgcaacgctggctcgatgatgaatgtaagcggctgaagctcaac
ctcaataacgacgccaaacgcagcctgctacaggcaaccgaaggcaacctgctggccacg
caccaggagctggagaagctctctttactctataaaagtgcgccaatcgatcaggaaaag
ctgctcagcgggctgcttaatcaggccaagttcgacatctttgacctgaacgacggtttg
ctgcgtggtaacccgaaaacacttatcaaggtgctcaacaagctggcgcacgataatgtc
gaacccgccagcatagcctggacgttgcacaatcaggctcagctgttactaaacctcaag
cagctgatccaatcgggcacgcccacgcaggatgcgttcaaaaagcacaatgtctggaaa
aatcagcagcagaacacccagcaggcgctggaccggctcaataccacgcagctggaacaa
ttgttggtcctgctggctgaattcgattcggcctataagcgcaacattctggttgcaccg
tatcaggcgctggcccatatagcactgagcttttgccagtcgctgccttttgccctgccc
tacgaggagctggcatga
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