Pseudoalteromonas viridis: J5X90_18870
Help
Entry
J5X90_18870 CDS
T07232
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5X90_18870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvb03019
]
J5X90_18870
03400 DNA repair and recombination proteins [BR:
pvb03400
]
J5X90_18870
Enzymes [BR:
pvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5X90_18870
Messenger RNA biogenesis [BR:
pvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J5X90_18870
DNA repair and recombination proteins [BR:
pvb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J5X90_18870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
TniB
SNF2-rel_dom
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QTL37806
LinkDB
All DBs
Position
2:complement(112244..114187)
Genome browser
AA seq
647 aa
AA seq
DB search
MNESALHQTLSQRFGFSAFRPGQEQTVTQLVNGHSSLAIFPTGSGKSLCYQLTALQLPNL
TLVISPLLALMKDQLEFLHSKNINAASLDSTLTREQSQSVMQNVRNGSIKVLMISVERFK
NERFREFIKQVPISMLVVDEAHCISEWGHNFRPDYLKLPDYRNELKIPLVLLLTATATKK
VKRDMANRFDIKPEHIVQTGFYRANLDLSVYAYPEAQKVQALIGYLKQQAGAGIVYVTLQ
LQAEQVAKQLQAAGVNAAAYHAGLDDSLRQSIQNDFMNNHTQVIVATIAFGMGIDKSDIR
FVVHYDLPKSIENYSQEIGRAGRDGQFSECITLANLDGVATLENFVYADTPEQASIQALI
DEIQSQQQQGLWEMQELSASKVSNIRLLALKTLLVQLELKGVIEAKYAFYADFRFKWLRT
EQDVISMFDANRQQFIQQIIANTHFKKVWGTVDIQALVQLGHDRNRIVAALDYLHEQGHI
ELESKRMMQVYQVIDTKLAEPNLAKELADYFLEKEQAEVKRIAAMLRFFELNTCLSYNLA
RYFDDENAPEQCGHCSACRGQVAQLTQSKQAEFPSDDTLRNDLNALKQHLMQIGVTPSLA
ILTRFLTGMTSPLATSSKFRQRAGFGSCSDIRYQQVLSKVQQLGFGA
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaatcggcgctccaccaaaccttatcgcagcgttttggcttttcagcattcagg
cctggtcaggaacaaacagtcacccagctggtcaacggccactctagtctcgcaattttc
ccaaccggctctggtaagtccttgtgttatcagctgacggccttacagctacccaattta
acgctagttatctcgccactgctggcgcttatgaaagatcagcttgagtttttacacagc
aaaaacatcaatgcggccagtttagattcaacgttaacccgcgagcaaagccagtctgtg
atgcaaaatgtcagaaatggcagcattaaagtgctgatgatctcggttgagcgttttaag
aacgagcgcttcagagaattcatcaagcaagtgcctatttctatgctggtggttgatgaa
gcgcactgtatctctgagtggggccataatttcaggcccgactatcttaagttacccgac
tatcgtaatgagttaaaaattccactggtgctgctgcttaccgccacggcgaccaaaaaa
gtaaagcgcgacatggcgaaccggtttgatataaagcccgagcatattgttcagacgggc
ttttatcgtgccaacctcgatttaagtgtgtatgcctacccggaagcgcaaaaagtgcag
gcactgattggctatttaaagcagcaagctggcgcaggcattgtgtatgtcacgctgcaa
ctacaggccgagcaggttgctaagcagttgcaggcggcgggcgtaaacgccgcagcctat
catgccggactggatgacagtcttcgtcagagtatccaaaacgactttatgaacaatcac
acacaagtgattgttgccacgattgcctttggtatgggcatagacaaatccgatattcgt
tttgtggtgcactacgacctgccaaaatcgatagagaattacagtcaggagataggccgt
gcagggcgcgacgggcaattctctgaatgcattactttggctaatttagatggcgttgcg
acgcttgaaaactttgtttacgccgacactccggagcaagccagcattcaggcgctgatt
gatgaaattcaatcgcagcaacagcagggcttgtgggaaatgcaggagctcagcgcctct
aaagtcagcaatatccgattgctggcattaaaaaccttgctggtgcagctcgaactcaaa
ggcgtgattgaggccaaatacgccttttacgccgactttagattcaagtggttacgcaca
gagcaggacgtcatcagcatgttcgacgcgaaccgccagcaatttattcagcagataatt
gccaatacgcactttaagaaagtgtggggcaccgttgatattcaggctttagtgcaacta
gggcatgacagaaaccgcattgttgcggcgctggactatttgcacgaacaagggcatatc
gagcttgagtcaaaacgcatgatgcaggtttatcaagttattgatactaagctggcagaa
ccaaatctggccaaagaacttgccgattactttttagagaaggagcaagctgaggttaaa
cgcatcgctgccatgctgcgcttttttgagttaaacacctgtttaagttacaacttagcg
cgttattttgacgatgaaaatgccccagagcaatgcggacactgttcagcgtgccgaggc
caggttgcacaattaacccagtctaagcaggccgaatttccgtcggacgatacattacga
aacgacttaaatgcgctaaaacagcatttgatgcaaattggcgttacgccaagcctggca
atactgacccgattcctaaccggcatgacctcgcctttggcaacgtcttccaaattcaga
caacgcgccgggtttggcagctgctcagacatccgctatcagcaggttttgagtaaagta
cagcagttgggttttggggcatga
DBGET
integrated database retrieval system
