Pseudoalteromonas viridis: J5X90_20000
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Entry
J5X90_20000 CDS
T07232
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pvb
Pseudoalteromonas viridis
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvb03016
]
J5X90_20000 (rnd)
Enzymes [BR:
pvb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
J5X90_20000 (rnd)
Transfer RNA biogenesis [BR:
pvb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
J5X90_20000 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
QTL38026
LinkDB
All DBs
Position
2:complement(394753..395886)
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AA seq
377 aa
AA seq
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MQYQFIQQQTELDAFIANLSESQVLAIDTEFMRRRTLYPEIALIQVYDGEHLALIDPLSE
LDFSGLWHLLRDEQIVKVLHSPSEDIEVFQKFAGFVPTPLFDTQFALQLLGEGNCVGFAN
MVKSMLDIELDKSMSRTDWLKRPLQASQLEYAAADVFYLLPCYQTISKKIAEKGLSHIVT
CESQLIAQKRAFRTPDHYLYLSIKNVWQLKPRDLAVLRTLASWRQNKAEKKNLALNFVLK
EHNMVEIAKRRPSSLNSLRNVPGVEPMEVNRSGKEILACIEAGKAVPESELPARVQRLID
YPGYKGAAKEIKQAIAEVAREHDIPVDVFASKKQINQVIGWNWKLDEQQRKTFLTPDLFM
GWRHEILKDALSKWHIA
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtgcagtatcaatttatccagcaacaaacagagctcgatgcctttatagccaacctgtca
gaaagccaggtgctggctatagacacagaatttatgcgtcgcagaactttgtatcctgag
attgccttaattcaggtctacgatggcgagcatctggcgttgatagacccgttaagtgag
ctagatttttcagggttatggcatttacttcgcgatgaacagattgtcaaagtattgcat
tcaccctctgaagatattgaagtatttcaaaagtttgcggggtttgtgccaacacctttg
ttcgacacccaatttgcgctgcagttgctcggagagggtaattgcgtggggtttgccaat
atggtcaagtcgatgctcgatattgagctcgataagagtatgtccagaacggactggcta
aagcgcccattgcaggcaagtcagctggaatatgccgcagctgacgtattttacctcttg
ccatgttatcagaccatcagcaaaaagattgccgaaaaggggctttcgcacatagtaacg
tgtgaatcgcagctgattgcccaaaagcgcgcattcagaacgccggatcattatctctac
ctgagtataaaaaatgtctggcagctaaagccgcgtgatcttgctgtcttaagaacactg
gccagttggcggcagaataaggccgagaaaaagaatctcgcccttaattttgtgctaaaa
gagcataatatggtcgaaatagcaaaacgcagaccgagctctttaaacagcttgcgaaat
gtaccgggtgttgaaccaatggaagtgaatcgctcaggtaaagaaattctcgcctgtatt
gaagcaggtaaagcggtaccggagtcagaattacctgcgcgcgtgcaacggctgattgat
tatcccggatacaaaggggccgcgaaagaaataaaacaagcaatcgcagaagtggccagg
gaacacgatattccggtggatgtatttgcctcgaaaaagcagatcaatcaggtgattggc
tggaactggaagttggatgaacagcagagaaagacctttctgacacccgatctatttatg
ggctggcgtcatgagatacttaaagacgcgctatcgaagtggcatattgcctaa
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