Providencia vermicola: G3341_05120
Help
Entry
G3341_05120 CDS
T06449
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pvc
Providencia vermicola
Brite
KEGG Orthology (KO) [BR:
pvc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvc03019
]
G3341_05120 (hrpB)
Enzymes [BR:
pvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
G3341_05120 (hrpB)
Messenger RNA biogenesis [BR:
pvc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G3341_05120 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
ResIII
HA2_N
AAA_22
Cas3-like_C_2
AAA_19
Yop-YscD_ppl_3rd
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
QIC15119
LinkDB
All DBs
Position
1188406..1190901
Genome browser
AA seq
831 aa
AA seq
DB search
MLNLIGAIIRVLPIHDVSNSLLTALEKSPQVLLHAPTGAGKSTVLPLIILNSGVIEGRII
MLEPRRIAARSVAMRLAEQLGEEIGHTVGLRMRSESRVSSNTRIEVVTEGVLTRMLQSDP
MLEGIGLVILDEFHERSLQADLGLALLLDTQQALRDDLKILLMSATLDDQGLNRLFPNAP
IVISEGRTYPVERYFYPINSNKLFHKEVANAVWQLCQREKGSLLLFLPGVGEIERTLTEL
SSIVSEDILLCPMYGALSIKEQQLAIQAAPAGKRKIVLATNIAETSLTIEGIRLVVDSGF
ERIGVFNPRTGLTKLVKQRISQASMVQRAGRAGRLEAGVCWHLFSQEQAERAAKYSEAEI
LHSDLSSLWLSLLQWGCQDTEQLQWLNAPPRPAIAAAKDLLYRLEAVDIHGQLTSVGRGM
AESGSSVRTAAILYQAQQSQNDEVVKLAALLVAILEEPPRQGRCDIHDYLERPTENWCRR
ASLLSGHKVTAAVRKAHALISEWLPTLLAVGFPDRIAKNRDNQGRYQLASGLGASLDEKD
TLSGREWLIAPMLWLPESSADAKIALAVAIEIDNLREACPHLFFQQETVEWDEQKGTLIA
WRRLQCGQLVVHSERLTNPDSKQIEQALLHWLRQNGLSSLDWHSSAHQLRIRCQLAKQWF
PDVVLPDVDDATLLDSLESWLAPYLRGITHRKQLQAIDVGALLAHRLDWQQKKWLDDALP
THYLSGSGSSVNIHYSLDKAPMMEIRMQEMYGQASNPTVAHGKVIVAVSLLSPAMRPLQI
TQDLGAFWQGSYREIQKEMKGRYPKHLWPDDPVNTRPTNKTKKALNNIEKH
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacctcattggagctatcatccgcgtgttacctattcatgacgttagtaattcc
ttactcaccgctttagaaaagtcacctcaagttctactgcatgccccaactggtgcgggt
aaatccactgttttaccactaattatattgaacagtggtgtgattgaggggcgtattatc
atgctagaaccacgccgtattgccgcacgtagtgttgctatgcgtttagctgagcaatta
ggtgaagaaatcggtcacacagtagggctacgtatgcgttcggaaagccgagtgagctca
aatacgcgtattgaagtcgtgactgaaggtgttttgaccagaatgttgcaaagtgaccca
atgttagaagggattggtttagtcattcttgatgaatttcatgaacgcagtttgcaggcg
gatctagggctagcactattgttggatacacaacaggcattacgcgatgatttaaagatt
ttattaatgtcagccactttggatgaccaagggttgaaccggttgttcccaaatgcacct
attgtgatatcagaagggcgtacttaccccgttgaacggtatttttaccctataaatagc
aataaactatttcataaagaggtcgctaatgcggtctggcaactgtgtcaaagagagaaa
ggatcgttgttactgtttttacctggggtaggtgaaattgagcgaacactgacagaactc
tcctcaatagtgagtgaggacatacttttatgtccgatgtatggtgcactgtctataaaa
gagcagcaactggctattcaagccgcgccagcagggaagcgtaaaattgttttagcaacg
aatattgcagaaaccagccttaccattgaaggcattcggttggtcgttgatagtggtttt
gaacgaataggggtttttaaccctcgaacggggctgactaaactggttaaacaaaggatt
agccaagcttctatggtgcagcgagcagggcgagcaggacgtttagaggcgggggtttgt
tggcacttatttagccaagaacaggctgaacgagctgcgaaatacagtgaggcagagata
ttacacagtgatttaagctccctatggttatcgctgttgcaatggggttgccaagatacg
gagcagctacaatggctgaatgcaccacctcgccccgcgattgccgccgctaaagattta
ctgtaccgattagaggctgtcgatatacatgggcaattaacgtcggtaggtcgtggaatg
gccgagtcaggcagctcggtgcggacagcggcgatattatatcaggctcaacaaagtcag
aacgatgaggtcgttaagctagccgctttactcgtggctattttagaagagccccctcgt
cagggaagatgtgatattcacgactatttagaaagaccaactgaaaattggtgtcgacgt
gcttccttgttgagtggccataaagtgacggctgctgtaagaaaagcacatgctttaatt
agtgagtggttacctactttgctagccgttggtttccctgatcggatagccaaaaataga
gataatcaaggtcgttatcaattagcgagtgggttaggtgcatcgttagatgagaaggat
acattatcaggtcgagaatggctgattgcacctatgctatggctgccagaaagctcagca
gatgcaaaaatagccttagcggttgcgattgaaatagacaatttgcgagaggcatgcccc
catttattttttcaacaagaaacggtggagtgggatgaacaaaaaggcacattgatagct
tggcggcggctgcaatgtggccaattagtggtacattcagaaagattgaccaatcctgat
agtaaacagattgaacaggcattgttgcattggttacgccagaatggtttgagtagtttg
gattggcattcttctgctcaccagctacgtattcgttgccaattggcgaaacaatggttt
cctgatgtcgttttgccggatgttgatgatgcgaccttgttggattcgttagagtcttgg
ctagcaccttatctcagaggtattactcatcgtaaacaactgcaagcgattgatgtcgga
gcactcttagcgcatcgtttagattggcagcagaaaaaatggttagatgatgcattaccg
acacactatttatcaggctcagggagttctgtgaatattcattactctttagataaagcg
ccgatgatggaaattcgtatgcaagaaatgtatggacaagcctctaacccaaccgttgct
catggtaaggtgattgtggcggtgtctttattgtcacctgcaatgaggccattacaaatt
acccaagatttgggcgcattctggcaaggcagttatcgtgagatacaaaaagagatgaaa
ggtcgctacccaaaacatttatggccagatgaccctgttaatacgcgaccaacgaataaa
actaaaaaagcgctaaataacattgaaaagcattaa
DBGET
integrated database retrieval system
