Providencia vermicola: G3341_08885
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Entry
G3341_08885 CDS
T06449
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pvc
Providencia vermicola
Pathway
pvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3341_08885 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvc03019
]
G3341_08885 (rne)
03009 Ribosome biogenesis [BR:
pvc03009
]
G3341_08885 (rne)
Enzymes [BR:
pvc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G3341_08885 (rne)
Messenger RNA biogenesis [BR:
pvc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G3341_08885 (rne)
Ribosome biogenesis [BR:
pvc03009
]
Prokaryotic type
rRNA processing factors
G3341_08885 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
TFIID-18kDa
Motif
Other DBs
NCBI-ProteinID:
QIC15785
LinkDB
All DBs
Position
complement(1990078..1993353)
Genome browser
AA seq
1091 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPIKEIAREYFPSNYHSQGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEDRTELKEALSSLEIPDGMGLIVRTAGVGKSAESL
QQDLLYRLRHWEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMA
RNHIEAIGRGDFASKIKYYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALT
AIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLREAVRQDRARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSVLRLIEEEALKENTHEVHAIVPVQIASYLLNEKRKAVSEIETRQRNVRVVIVPNDQMQ
TPHFHVIRIRKGEEVNTLSYNLAQYHETETLNGTEDAAAERKMPEQPAISAFALQEPVEQ
TAVAKPKESKTRPEPAKQTAKVDAQPGLFSKLAAFFKKIFGEEEKVAEKPVEKNRQNSGN
DKRRHNERRNNRRNNRRDRDENSDNRENRSNRNAQADDNNNRKGRNNKNSGQQEEQTVDN
ASREAQQQQRREQRAERRRRQDEKRQQQAAKAQQDATQDTDTTATEKEEAQPRPVTPRRQ
RRQLTQKVRITDTVDIVEQNEDPTKAEVVTQNSAKTVAALPAPVHIAEQDIELVDVNEEH
SQDNQGNEEEKQDTIIPRRSRRSPRHLRVSGQRRRRYRDERHLTKSPMPLFAAVASPELA
SGKVCISYPLVQPQQESMAIITNEEMLEQQGVLAVATVEAAEAISSSATQSSQEVTEVVT
VEQTQKTDVEEAEIVAESTDSQVMTLEPASAPQAEPVIAVHTEQPAQSAQETVQSQVVSD
EKQPAVESTTIVEEVIENTVIEQAQPVADTEETRVIQPQSMAVEVEQVSTEAVEAPVIAE
KVSKPAVIVTNKAIRHATSPMMKAPAPEVVESSFEIKVYQREASTFVGKGAGGHVATNHA
TSGMAKPASFE
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaataaacgcgactcaacaggaagagttgcgtgttgcccttgttgac
gggcaacgactctatgatttggatatcgaaagtccaggtcatgagcaaaaaaaggcaaat
atttacaaaggtaaaatcactcgtattgaacctagtctagaagctgcttttgttgattac
ggtgctgaaagacacggtttccttcccatcaaagagatcgctcgcgaatacttcccaagc
aactatcactcccaaggtcgtcctaatattaaagatgttctcaaggaaggccaagaagtg
atcgttcaagttgataaagaagagcgtggcaacaaaggtgccgcactcactacctttatt
agcctagctggaagctacttggttttaatgccaaataacccacgtgctggcggtatttct
cgtcgtattgaaggtgaagatcgtacggaattaaaagaagcgttgtcttcgctcgaaatt
ccagatggtatgggtttgattgtccgtaccgcaggtgttggcaaatcagcagagtcttta
caacaggatttgttgtatcgtctacgtcactgggaagccatcaaaaaagcggctgaaaac
cgtccggctcctttcttaatccaccaagaaagtaatgtgattgtacgagcattccgtgat
tatctgcgtcctgatattggtgaaatcctgattgataacccaaaagttgtcgagatggcg
cgtaaccatattgaagccattggccgtggcgattttgccagcaaaatcaaatattatagc
ggtgatgttccgctgtttagccactatcagatcgaatcacaaatcgaatctgcgttccaa
cgtgaagttcgtcttccttcagggggcgctttggttattgataccacagaggctctcacc
gctattgatattaactcctcacgctctactcgtggcggtgatatcgaagaaactgcattt
aatactaaccttgaagcggcagatgaaattgcacgtcaattacgcctccgtgaccttggt
ggtctcattgttattgactttatcgacatgacgccagttaggcatcaacgtgaagtcgaa
aaccgtttacgtgaagctgttcgtcaagatcgtgcgcgtattcaaatcgcacgtatttca
cgtttcggcctattagaaatgtcccgtcagcgtttaagcccatctttgggtgaatctagc
caccatgtctgccctcgttgttcgggaaccggaaccattcgtgataatgagtctttatcg
ctatctgtacttcgtttaattgaagaagaagcactgaaagaaaatactcatgaagttcat
gcgattgtccctgtacaaatcgcttcttatctactcaacgaaaaacgtaaagccgtaagt
gaaattgagactcgtcagcgaaatgttcgtgtggttatcgtaccaaacgaccaaatgcag
acccctcacttccacgtgatccgtattcgtaaaggtgaagaagttaacactctgagttac
aaccttgcgcaataccacgaaaccgaaacattaaatggtacagaagacgctgctgctgaa
cgcaaaatgcctgagcagccggctatttctgcatttgctttacaagaacctgtagagcaa
acagcagtggctaagccaaaagagagcaaaacacgtcctgagccagcaaaacaaacggct
aaagtcgatgctcaaccgggtttattcagcaaactcgctgcgttctttaaaaagatattc
ggtgaagaagagaaagttgccgaaaaacctgtcgagaaaaaccgtcagaactcgggtaac
gataaacgtcgtcataatgaacgccgcaacaatcgccgtaataatcgccgtgatcgtgat
gaaaacagcgataaccgcgaaaatcgttctaaccgtaatgctcaagcagacgataataac
aatcgtaaaggccgtaacaataaaaattccggtcaacaagaagagcaaactgttgataat
gctagccgcgaagctcaacaacaacagcgtcgtgagcaacgtgctgaacgtcgtcgtcgt
caagatgagaaacgccaacaacaggccgctaaagctcaacaagatgcgactcaagatacc
gataccaccgctactgagaaagaagaagctcaaccgcgcccagtcacaccgcgccgtcag
cgtcgtcagttaactcagaaggtacgtatcactgataccgtagacattgttgaacaaaac
gaagatccgaccaaggctgaagtcgttacccaaaacagtgctaaaacggttgcagcatta
ccggcaccagtacacatcgctgagcaagatatcgaacttgttgacgttaacgaggagcat
tcacaagataaccaaggcaatgaggaagagaagcaagacacgatcattcctcgtcgctca
cgtcgttcaccacgtcacttgcgtgtcagtggtcaacgtcgccgtcgttatcgtgatgag
cgccatttaactaaatcaccaatgccgctgttcgccgctgttgcttctcctgagctggct
tcaggtaaagtgtgtatcagttacccgcttgttcaaccacagcaagaatccatggcgatc
atcaccaatgaagaaatgcttgaacaacaaggtgttttagccgtagcaacggttgaggca
gcggaagcgatttcttcttcagcgactcaatcctcgcaagaagttactgaggtcgtcact
gttgagcaaacgcaaaaaacagacgtcgaagaagctgagattgttgctgaatcaaccgat
tcacaagtcatgacgcttgaacctgcaagtgctccgcaagcggaaccggttatcgctgta
cataccgaacagcctgctcagtcagctcaagaaactgttcaatcacaagtcgtgagtgat
gaaaaacaacctgcggttgaatctacgactattgtagaagaagtgattgaaaataccgtt
attgaacaagctcaacctgttgcggatacagaagaaacacgggtcatacaaccacagtct
atggctgttgaggttgaacaagtttcaactgaagccgtggaagcacctgttatcgcagaa
aaagtatcaaaacctgctgtgatagtcactaacaaggctatccgccacgcaacctcgcca
atgatgaaagcgcctgcgcctgaagtcgttgaatcttcattcgagattaaagtttaccaa
cgtgaagcatcaacttttgttggtaaaggtgctggtggccacgtggcaactaaccatgca
acatctggaatggcaaaacccgcaagttttgaataa
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