Providencia vermicola: G3341_10945
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Entry
G3341_10945 CDS
T06449
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pvc
Providencia vermicola
Brite
KEGG Orthology (KO) [BR:
pvc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvc03016
]
G3341_10945 (rnd)
Enzymes [BR:
pvc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
G3341_10945 (rnd)
Transfer RNA biogenesis [BR:
pvc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
G3341_10945 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Baculo_LEF-2
Motif
Other DBs
NCBI-ProteinID:
QIC16165
LinkDB
All DBs
Position
complement(2450780..2451904)
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AA seq
374 aa
AA seq
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MNYRLVTTDSELAQVCQQASEADWLALDTEFVRTRTYYPQLGLLQLYDGKQVSLIDPLSI
SDFSPFKALLTNQTVTKFLHAGSEDLEVFLHDFQCVPEPMVDTQVIAAFLGYPISCGFAS
LVAEYLGVTLDKSESRTDWLARPLSEKQCLYATADVLYLLPLAKILMQKVEEAGYLADAL
EECQRTVERRQKITDPALAYRNITNVCQLKDEQLACLQMLAEWRLNQAKARDMAINFVVK
EEHLWKVARYLPSSLGELDALGLTGQEIRCHGRRLLSIVEKAKQMNESDYPPMVANLNEQ
SQYKSLFKEIKAVVKEIAEHEKFNAELLASRRQINQLLSVHWGIKSLSKQPELLDGWRGR
LLAEPITKLLNQTH
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcgtttagtaacaacggacagtgagcttgcacaagtatgtcagcaggcaagt
gaagctgattggcttgcattggataccgaatttgtccgtactcgaacttattatccacaa
ttaggtttgctacagctttatgatggaaaacaagtttcattgatcgaccctttatcaatc
agcgacttttcaccgtttaaagcgttgctgactaatcagactgtcactaaatttttgcat
gcaggtagtgaagaccttgaagtatttttgcatgactttcaatgtgtccctgagccgatg
gttgatacccaagtgatcgccgcatttttaggttacccaatttcgtgtggctttgcctct
ttagttgcagaatatctaggggtaacgctggataaaagtgaatctcgaaccgattggtta
gcgcgtccactcagtgaaaaacaatgcctatatgcgacagcagatgttttatatctgttg
ccattagcgaaaattctcatgcaaaaagtggaagaagcgggctatcttgctgatgcctta
gaagagtgtcaaagaaccgttgagcggagacagaaaatcacggatccggcgctagcctat
cgaaacatcacgaatgtgtgtcagcttaaagatgaacagcttgcttgtttgcaaatgctg
gctgaatggcgtttaaatcaggccaaagcacgtgatatggccattaattttgttgttaaa
gaagaacatttatggaaggtggctcgttacttgcctagttcgttaggtgaacttgatgct
ttgggactcacggggcaagaaatccgatgtcacggaagacgattgctcagtattgtggaa
aaagccaaacaaatgaatgaaagcgactatccgccaatggttgcaaacttgaacgaacaa
tcccagtataaaagtttatttaaagaaattaaggcggtagtaaaagaaatcgctgaacat
gaaaaatttaatgctgaattactggcatctcgtcgacaaattaatcagttgttatcggta
cattgggggattaaatccttgtctaagcagcctgaattattagatggctggcgaggtcgc
ttgctagcggaacccattacaaaactgcttaatcaaacacactag
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