Pseudomonas viridiflava: CFBP1590_0645
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Entry
CFBP1590_0645 CDS
T06554
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pvd
Pseudomonas viridiflava
Pathway
pvd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CFBP1590_0645 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvd03021
]
CFBP1590_0645 (rpoD)
Transcription machinery [BR:
pvd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CFBP1590_0645 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
SMS08231
UniProt:
A0A1Y6JGN7
LinkDB
All DBs
Position
I:complement(594758..596608)
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHES
APDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTSEGGRLSDVLSGYIDPDDGIAPPAEV
PPPVDPKAAKAEGADDDEEESADASDEEDEVESGPDPVIAAQRFGAVSDQMEITRKALKK
LGREDKHAIAEMVALAELFMPIKLVPKQFEGLVERVRGALERLRAQERAIMQLCVRDARM
PRADFLRQFPGNEVDESWTDALAKGKSKYAEAIGRLQPDIQRCQQKLSALEEETGLKIAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcaccctgggtcgtgag
cagaagtatctgacttacgcagaggtcaacgaccacctgcccgaggatatttcagatcct
gagcaggtggaagacatcatccgcatgatcaacgacatggggatcccggtacacgagagt
gctccggatgcggacgccttgatgctggccgacgccgataccgatgaggcagccgcagaa
gaagcggccgcagcattggcagcggttgaaaccgacatcggtcgtaccactgatcccgtt
cgcatgtacatgcgtgaaatgggtaccgttgaacttctgacccgtgaaggcgagatcgaa
atcgccaaacgtatcgaagaaggcatccgtgaagtgatgggcgcaattgcgcacttccct
ggcacggttgaccatattctttccgaatacacacgtgtcacgagcgaaggcggtcgcctg
tccgacgttctcagcggatacatcgacccggacgacggcattgcgccgcctgccgaagtg
cctccgcctgtcgaccccaaagccgccaaggccgaaggtgccgacgacgacgaggaagaa
tcggcagacgcttccgatgaagaagacgaagtcgaaagcggcccggatccggtcatcgct
gcacagcgcttcggtgctgtctccgatcagatggagatcacccgcaaggccctgaagaag
ctcggtcgcgaagacaagcacgccattgccgaaatggttgctcttgccgaactgttcatg
ccgatcaagctggttccaaagcagtttgaaggtctggtagagcgtgtgcgtggtgccctc
gagcgtctgcgtgcccaggaacgcgccatcatgcagctgtgtgtacgtgatgcacgtatg
ccgcgcgccgacttccttcgccagttccctggcaacgaagtcgacgagagctggaccgat
gcgctggccaagggcaagagcaaatacgctgaagccattggccgcctgcagcctgacatc
cagcgttgccagcagaagctgtctgcgctcgaagaagaaaccggcctgaagattgccgag
atcaaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaa
gagatggttgaagcgaaccttcgtctggtgatctccattgccaagaagtacaccaaccgc
ggtctgcaattcctcgatctgatccaggaaggcaacatcggtctgatgaaggcggtggac
aagttcgaataccgtcgtggttacaagttctcgacttatgccacctggtggatccgtcag
gcgatcactcgctcgattgccgaccaggcacgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccgccagatgttgcaggaaatgggtcgcgaa
ccgactccggaagagctgggcgaacgcatggaaatgcctgaggacaagatccgcaaggta
ctgaagatcgccaaagagccgatctccatggaaaccccgatcggtgacgacgaagattcg
catctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccacggtc
gaaagcttgaaagaagcgacacgcgaagtgctgtcgggcctcacggctcgtgaagccaag
gttctgcgcatgcgtttcggcatcgacatgaacaccgaccacacgctggaagaagttggc
aaacagttcgacgtgacccgcgagcggatccgtcagatcgaagccaaggcactgcgtaaa
ctgcgtcacccgacccgtagcgaacacctgcgttcgttcctcgacgagtaa
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