Pseudomonas viridiflava: CFBP1590_0729
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Entry
CFBP1590_0729 CDS
T06554
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pvd
Pseudomonas viridiflava
Pathway
pvd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFBP1590_0729 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvd03021
]
CFBP1590_0729 (rpoC)
03400 DNA repair and recombination proteins [BR:
pvd03400
]
CFBP1590_0729 (rpoC)
Enzymes [BR:
pvd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFBP1590_0729 (rpoC)
Transcription machinery [BR:
pvd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFBP1590_0729 (rpoC)
DNA repair and recombination proteins [BR:
pvd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFBP1590_0729 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF3150
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
SMS08315
UniProt:
A0A0D0MPI6
LinkDB
All DBs
Position
I:683418..687617
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRIHETVNDRDGGSVKNTRIVDTTVGRALLFQVVPAGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKERVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGCLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VGLDGKDLLLPGTDVPAQYFLPANALVGVADGAQIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLSTEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREMDKPMR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgatgctatc
cgcatcggcctcgcgtcgcctgagatgatccgctcgtggtcgttcggtgaagttaaaaaa
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggtctgttctgcgccaag
atctttggcccggtaaaagattacgagtgcttgtgcggtaagtacaagcgcctgaagcac
cgcggtgtcatctgcgaaaaatgcggtgtggaagtggctctggccaaggttcgtcgcgag
cgcatggctcacatcgaactggcttcgccagtcgctcacatctggttcctgaagtccctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccaccctcgaaaagggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggtgacgacttcgacgcccgtatg
ggtgccgaagctgtccgtgaactcctgcacgctatcgatctggagcacgaaattggccgt
ctgcgtgaagagattccgcaaaccaattccgagaccaagatcaagaagctgtccaagcgt
ctgaagctgatggaagccttccagggttccggcaacctccctgagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtcctctggttccattggacggtggccgtttc
gcgacgtccgacctcaacgacctgtatcgtcgagtgatcaaccgtaacaaccgtttgaag
cgtctgctggatctgtccgctcctgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgatgccctgctggacaacggtcgtcgcggtcgcgcaatcaccggttccaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgcgttgactactccggtcgttcggtaattaccgttggcccgacc
ctgcgtctgcatcagtgcggtctgcctaagaaaatggctctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggcctggccacgacgatcaaagctgccaagaagatg
gtcgagcgcgagctgccggaagtgtgggacgttctcgctgaagtgattcgcgaacaccca
gtgcttctgaaccgtgcgccaacgcttcaccgtctgggtatccaggcatttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccagatggccgttcacgttcctttgacgctggaagcccagctcgaagcg
cgtgcgctcatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccttcgcaggacgttgtactgggtctgtactacatgacccgtgaagcgatcaacgcc
aagggcgaaggccgtgtgtttgcagacctgcaggaagtcgaccgcgtattccgcgccggc
gaagcagcgctgcacgccaaggtcaaggtccgcatccacgaaacggtcaacgatcgtgat
ggtggcagcgtcaagaacacccgtatcgtcgacaccactgtcggccgtgcgctgttgttc
caggtggttccggccggcctgtcctacgacgtcgtcaaccagccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgtgtggttggtctgaaagagaccgtcattttc
gctgaccagttgatgtacaccggttttgcctactcgactatctcgggtgtttcgatcggc
gttaacgacttcgttatcccggacgagaaggctcgcatcattgacgcggccaccgaagaa
gttaaagagatcgaaagtcagtacgcctcgggcctggttactcagggcgagaagtacaac
aaggtgatcgacctctggtccaaggcgaacgacgaagtatccaaggcgatgatgtcgaac
ctctcgaaagagcgggtgatcgaccgtcatggtgtcgaagtcgaccaggaatccttcaac
tcgatgtacatgatggctgactcgggtgcgcgtggttctgctgcccagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggctccatcatcgaaacgccgatcact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctcgactcacggtgctcgt
aagggtcttgcggataccgcactgaaaaccgctaactccggttatctgactcgtcgtctg
gtagacgtcgcgcaggatctggtagttaccgaagtcgattgcggcaccgaacacggcttg
ctgatgactccgcacattgaaggcggtgacgttgtcgagcctctgggtgagcgcgtactg
ggtcgagtcatcgcccgtgacgtattcaagccaggcactgaagaagtgatcgtgcctgcc
ggtacgctggtagacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgttcgatcgccgatcagctgtgaaacccgctacggcatctgcgccaagtgctacggt
cgcgacctggctcgtgggcatcaggtcaacattggtgaagctgtcggcgttatcgctgca
cagtccatcggtgagccgggtacccagctgacaatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcagctgacagcgttcaggtgaaaaatggcggtactgtccgtctt
cacaacctgaagcacgttgaacgtgttgacggttgcctggttgcggtatcccgctccggt
gagctggcaatcgccgatgacttcggtcgtgagcgtgagcgttacaagctgccatacggt
gcagtgatttcggtgaaggagggcgacaaggtcgacgctggctctatcgttgccaagtgg
gatccgcacactcacccaatcgtcaccgagatgaaaggtactgttacctacgtcggcatg
gaagaaggcatcacgatcaagcgtcagaccgacgaattgaccggtatgaccaacattgaa
gtgctcgatgccaaagaccgtccagctgccggcaaggacatccgtccggccgtgaagatg
gtaggtctggatggcaaggatctgttgctgccgggtactgacgtacctgcccagtacttc
ctgcctgcaaacgcccttgttggtgttgcggacggtgcgcagatcgcgatcggtgatgtt
atcgctcgtattccgcaggaaacttcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacctgttcgaagcgcgtcgtccgaaagaggcttcgatccttgcagaagtcagc
ggtaccatcgcgttcggtaaagagaccaaaggcaagcgccgtctggtcattaccccgaac
gacggtagcgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtcaacgagatccaggacgta
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccattctgcgtcagatg
ctgcgtaaggttgagattgccgagtctggcgattccagcttcatcaagggcgaccagatg
gagttgactcacgtactggtagagaacgagcgtctgagcacggaagacaagtttgtctcc
aagttcacacgcgtactgctgggtatcaccaaggcatcgctgtccactgagtcgttcatt
tccgcggcctccttccaggagacaacccgcgtactgaccgaagcagctgtgactggcaag
cgcgactacctgcgcggcctgaaggagaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcttatcacagcgagcgcaagcgtcgccgtgaaatggacaaaccgatgcgt
gtcagtgcgagcgaggtagaagccgctctgactgaagcgttgaactccagcggtaactga
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integrated database retrieval system
