Pseudomonas viridiflava: CFBP1590_0940
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Entry
CFBP1590_0940 CDS
T06554
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pvd
Pseudomonas viridiflava
Pathway
pvd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CFBP1590_0940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvd03400
]
CFBP1590_0940
Enzymes [BR:
pvd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CFBP1590_0940
DNA repair and recombination proteins [BR:
pvd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CFBP1590_0940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
SMS08526
UniProt:
A0A1Y6JF14
LinkDB
All DBs
Position
I:903220..906696
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AA seq
1158 aa
AA seq
DB search
MPVTTSLSAGFMVVHGNRLDELRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DAQDEDLGGCGIAAAIDVQLPGSFMWKLYRTVLGRDEIPETSLLDKGPLTWRLMRLLPEL
INQPHFEPLQRFLTTDTDLRKRYQLSERLSDLFDQYQVYRADWLEDWAAGRHQLRNVRGE
PKPLTASNCWQAELWRALLHDVGAEGMAQSRAGVHQRFIERISTLTEAPAGLPARVIVFG
ISSLPAQALEALAGLARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQARKTGMPMVL
DPEALHQHAHPLLAAWGKQGRDYINLLDSHDDPRSYRASFKDERIDLFSESEPRNILNQL
QDDILELRPLDETRELWPAVDALKDRSIRFHVAHSAQREVEVLHDQLLARFSRDPELRPR
DVIVMVPDIDSYAPHIRAVFGQIERDDRRFIPFTLADQGQRGREPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRARFRIQERDLPTLHRWIEGAGIRWGLNAPQRAGLGLPDALEQNS
WHFGLRRMLLGYAVGAGAAYEGIEPYDEIGGLDAALIGPLVALIDALEAAHGELSKPATP
TQWGARLQAVLQLFFAADSEHDDYLLAQLETLRENWLETCETVGLIDELPLTVVREAWLA
GLDQGRLSQRFLAGSVNFCTLMPMRAIPFKVVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSARDQLYISWVGRSIRDNSDRPASVLIGQLRDHLASGWKLAG
EPDTTGKLDEGERLLKALTLEHPLQPFSAHYFHEGTGYFSFAREWRLLHETGLEMPVSPG
LTPHEQEEPLTIAQLQDFLRNPVKHFFSQRLKIYFEVAEAPLADEEPFVLDALERYGLSD
SLLNAAMAQPDDIDNALQAQALKLQASGLLPLAGFGTCMQQELIEPLPDVLRRYQELLTL
WPEPLSSALPISFSHGGVSIDGWLGGLHRNARGELLLVTAIPNSIGSKKTRKWHRLIRPW
VNHLVACACELPLSTALVASDETLMLAPLEKDAAVITLNHLLMAWLRGMQQPLPVAVKTA
FAWLGQPLDKAEAVARKAYEGDGQTTDGERRESTALARQYPDFDALMDSEEFVGWCETLY
KPIYDASWQSLSSPEASA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttacaacctcgctgagcgctggtttcatggtggttcatggcaaccgcctggat
gagctgcgcagtctggttgtttcctggatgaggcgttatccgctggcaccactggagaac
gagattgcgctggtacagagcaacggcatcgcccagtggctgaagctggctctggccgaa
gatgctcaggacgaagatctcggcggatgcggcatcgccgctgccatcgacgtccagtta
cccggcagtttcatgtggaagctctaccggacagtcttgggtcgagatgaaatccccgag
acttccctgctcgacaaaggcccgctgacctggcgcctcatgcgcctgctgcccgagctc
atcaatcagcctcacttcgaacccttgcagcgctttctcacgaccgacactgatctgcgc
aagcgctatcaattgtctgagcgtctgtctgacttatttgaccaatatcaggtgtatcgc
gccgactggctggaagactgggcagccggacgtcatcagttgcgcaacgtgagaggtgag
cccaagccgctgaccgcttccaactgctggcaggcggagttgtggcgagcactgctgcat
gacgtcggggcagaaggcatggcgcaaagccgtgcaggcgtgcatcagcgtttcatcgag
cgcatcagcacgctgactgaagcccccgccggactgccagcacgtgtcatcgtattcggt
atttcgtcactgcccgcgcaggcgctcgaagcgctcgccggactggcccgtttcagtcag
gttctgctctgcgtccacaacccatgccgccatcactgggccgatatcgttgccgataag
gacctgttgcgtcatcagtacaagcgtcaggctcgtaagaccggcatgccgatggtgctc
gaccccgaggccctccaccagcacgcgcatcccttgctcgcagcatggggcaagcagggt
cgcgactacatcaatctgctcgacagccatgacgacccgcgtagctatcgtgcctcgttc
aaggacgagcgcatcgacctgttcagcgaaagcgaacccaggaacatactcaatcagttg
caggatgacatccttgagctgcgtcctctggatgaaacgcgggagctctggcccgccgta
gacgctttgaaggatcgctccatccgctttcatgtcgcccacagcgcgcaacgggaagtc
gaagtgctgcatgatcagctcctggcccgtttcagtcgtgatcccgagttgcgtccgcgt
gatgtgatcgtcatggttccggacatcgacagctacgcgccgcacattcgcgctgtcttc
ggccagatagagcgcgatgatcgtcgcttcattcctttcacgctggcagaccaggggcaa
cgtggccgcgagcctttgctgatcgctgttgaacacctgctgaaactgcccgacagccgc
tttccggtcagcgaaattcttgacctgctcgacgtcccggcgctgcgcgcgcgcttccgg
attcaggagcgtgacctgccgaccctgcatcgctggatcgaaggcgcaggcatccgctgg
gggctgaacgcacctcaacgtgcagggctgggtttgccggatgcgctggagcagaacagc
tggcacttcggcctgcgccgcatgttgctcggctatgcagtcggtgccggtgctgcctac
gaaggtatcgagccttacgatgaaatcggagggctggacgccgcgttgatcggcccgctg
gtggccctgatcgatgcgctggaggccgctcatggcgaactctcgaaaccggccaccccg
acgcaatggggggctcgtctgcaagctgtcctgcaactcttctttgccgccgacagcgag
cacgacgattatctgctcgcccaactcgaaaccctgcgcgagaactggctggagacctgc
gaaaccgtcggcctcatagacgagctgcctttgacggtcgttcgcgaagcctggctggcc
gggctcgaccagggtcggctgtcccagcgctttctggcaggctcggtcaacttctgcacg
ctgatgcccatgcgcgcgattccgttcaaagtggtctgcctgctgggcatgaacgatggt
gattacccgcgtgcccagccgccgctggacttcgacctgatgggcagtgactaccgcccc
ggcgaccgttcgcgacgtgaagacgaccgctatctcctgctggaggcgctgctatccgct
agggatcagctttacatcagttgggtcggccgtagcattcgtgacaacagtgatcggccc
gcatcggtgctgatcggtcaactgcgtgatcatctggccagcggctggaagctggccggt
gagccagatacaaccggcaagctcgatgagggagaacggctgctgaaagcgttgacgctg
gaacatccgttgcaacctttcagcgcccattattttcatgaaggcaccggctacttcagc
ttcgcccgcgaatggcgattgctgcacgagacggggctcgagatgcctgtatcaccgggg
ctaactcctcatgagcaggaagagccgttgaccattgcccaactgcaggactttctgcgc
aaccccgtgaagcactttttcagtcaacgtctgaagatctacttcgaagtggccgaagcc
ccgctggccgatgaagaacccttcgtgctcgacgcgctagagcgttacggactcagcgac
agtctgctcaacgccgccatggcgcagcctgacgacatcgacaacgccctccaggcacaa
gcgctcaagttgcaggccagcggtctgctgccactggcaggtttcggcacctgcatgcag
caggagttgatcgagccgctgcccgatgtactcaggcgttatcaggagctgttgacgcta
tggcccgagccgctaagcagtgcgctgccaatcagcttcagccatggcggtgtgagcatc
gacggctggctgggcggactgcaccgcaatgcgcgaggcgagttgttgctggtcacggcg
attcccaacagcatcggctcgaagaaaacccgcaagtggcatcggctgatccggccgtgg
gtcaatcatctggtggcgtgtgcctgtgagctgccattgagcaccgcactggtggccagc
gatgaaaccctgatgctggctccactggaaaaggatgccgctgtcataaccctcaatcac
ctgttgatggcctggctgcgcggtatgcagcaaccgttgccggtggccgtgaaaactgca
ttcgcctggctgggacaacccttggacaaggccgaggccgtcgctcgtaaagcctatgaa
ggcgacggccagaccaccgatggcgagcgccgggaaagcacggcgctggcccgccagtac
ccggacttcgatgccttgatggacagcgaagaattcgtcggctggtgcgaaacgctgtac
aagccgatctacgacgcctcgtggcaatcgctctccagcccggaggccagtgcatga
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