Pseudomonas viridiflava: CFBP1590__1650
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Entry
CFBP1590__1650 CDS
T06554
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pvd
Pseudomonas viridiflava
Pathway
pvd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFBP1590__1650 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvd03019
]
CFBP1590__1650 (deaD)
03009 Ribosome biogenesis [BR:
pvd03009
]
CFBP1590__1650 (deaD)
Enzymes [BR:
pvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFBP1590__1650 (deaD)
Messenger RNA biogenesis [BR:
pvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFBP1590__1650 (deaD)
Ribosome biogenesis [BR:
pvd03009
]
Prokaryotic type
rRNA helicases
CFBP1590__1650 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
HVO_A0114
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
SMS09236
UniProt:
A0A0Q0EPH0
LinkDB
All DBs
Position
I:1687486..1689156
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AA seq
556 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPDRGDRGDRPERERRAPVPLAEGRA
RCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLKD
TRVAGKQLKLRRYRED
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctctcgaacttcatcccaatatcgttgcagct
gtcgtcgccactggctacgaagagccttcggccattcagcagcaatcgatcccgattatt
ctcgccggtcacgacatgattggtcaggcgcaaaccggtacgggtaaaaccgccgcgttc
gcactgcctatcctgcatcgcatcgacccgagcaagcgcgagccgcaagcactgatcctg
gccccgacccgcgagctggcacttcaagttgccaccgcgttcgagacctacgcaaaacaa
atgccgggcgtgaccgttgtagcggtctacggcggcgcgcctatgggccctcagctcaag
gccatccgcaacggcgcccaaatcgtcgtcgccactccaggccgtctgtgcgatcacctt
cgccgtgacgaaaaagtcctggcgaccgtgaaccacctggttctcgacgaagcggacgaa
atgctgaagctgggtttcatggacgacctggaagtgatcttcaaggccatgcctgagacc
cgccagaccgttctgttctcggccacgctgccacagtcgatccgtgccattgcagagcgc
catctgcgcgatccgaagcacgtcaagatccagaccaagacccagaccgttaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaagacctcggctgttctgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtccgcaccaagcaggcgaccctggat
ctggccagcgcgctggaagccaaaggctacaaggctgcagcactgaacggcgacatcgcc
cagaaccagcgtgagcgcgtcatcgactccctcaaggatggccgtctggacatcgttgta
gcgaccgacgttgctgcccgtggtctcgacgttccgcgtatcacccacgtgttcaacgtg
gacatgccttacgatcctgagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgcgcactgctgctggtgacgccgcgtgagcgccgcatgctgcaggttatc
gagcgtgtgactggccagaaggttgcggaagtccgcctgccggatgcccaggctgtgctg
gatgcccgcatcaagaagctgaccaacagcctgtcgccgctggttgccgacgccgagtcg
acccacggtgatctgctggatcgtctgactgccgacatcggttgctcgccacgtgcactg
gctgccgctctgctgcgcaaggctaccaacggtcaggccctgaccctggctgccatcgag
cgcgagcgcccactggttccgaacaacgccccgcgtggcgatcgtccggaccgtggtgat
cgtggcgatcgtccagagcgcgagcgtcgtgcgccggttccattggccgaaggtcgtgcc
cgttgccgtaccgcgctgggtgcccgtgacggtatcgctgccaaaaacctgctgggtgcc
atcctcaacgaaggcggcctggcccgcgaagccatcggccgtatccaggtccgtgacagc
ttcagcctggtcgagctgccggaagatggtcttgagcgtctgctgaccaagctcaaggac
acccgcgttgccggcaagcagttgaagctgcgtcgctatcgcgaggattga
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