Pseudomonas viridiflava: CFBP1590__2949
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Entry
CFBP1590__2949 CDS
T06554
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pvd
Pseudomonas viridiflava
Pathway
pvd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFBP1590__2949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvd03019
]
CFBP1590__2949
03400 DNA repair and recombination proteins [BR:
pvd03400
]
CFBP1590__2949
Enzymes [BR:
pvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFBP1590__2949
Messenger RNA biogenesis [BR:
pvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFBP1590__2949
DNA repair and recombination proteins [BR:
pvd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CFBP1590__2949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-HYPF
Motif
Other DBs
NCBI-ProteinID:
SMS10535
UniProt:
A0A1Y6JKR2
LinkDB
All DBs
Position
I:complement(3240520..3243114)
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AA seq
864 aa
AA seq
DB search
MSFGFDELQTVLGIWPVATDWSEKADDSLLERTFQLLSAAQAQPSDITWHADLQPLLRHV
LLRASDGAGKNMRLRVPADRRWPDRASWAAHGVEAMEAGPTAYLLTAREWHPEWLGSGEH
GVFADTFSDKKVRRMVHCEVDPFIHDGTGFTNYSSPGQREAVRAAFLIPEGDTLMVNLPT
GSGKSLVGQAPALVNKEDGHLTIFVVPTVALALDQERAMQQLFRSNGPSRPDWPLAWYGG
LSKEKRAEIRQRLRNGTQRILFTSPEALTTSLLRVVSDATTDGMLRYFVIDEAHLVTQWG
DEFRPSFQALAGLRHSLLRLAPRGFRTLLMSATFTDETVETLASLFGPPERVQMVSAVHL
RPEPQYWFYKAASTYEKQERVLEALRNAPRPFILYVTKREEIASWNTVLRSRGGLRRLAT
FDGGTPDRERQRIILEWAANRLDGIVATSAFGVGLDKIDVRTVIHATIPETLDRFYQEVG
RGGRDGKSSVSLLVFDDTDWALPERLAKPKIISDELGFSRWKAMYQSRQPTTEEDLWGIN
IDAVREGLPGGSEHNVNWNMRTLILMARAGLITLELEVNRDEQDTEPGEDASSMLAAMAN
VRVRIRNDGHLISKVWEDVIRASRNKTLEAAERNLQMMRQLLPRSSGLDQQIGQEVGATL
TQLYRIRSLRWPVQVTQVCGGCPADRFDTEDRRHYAEPVVVPVSRVLSSSADAWRENFPW
VDPAFAYVFYDESRPRDGVRQAILQFAGWLVQSCCVRELAAHPESPLVCLPEWAQLYQFA
RDRVLLHRSVLDSELEPYSPLARLTVLEPDSSPELIIDTQMLQRPFHVVLLPLCMPDPGN
SLRRLADVTPNALHLEKLIQVITQ
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcggtttcgatgaactacagactgtcctcgggatttggccagtagccactgat
tggtcggaaaaggcagatgacagcttgctggagcggactttccagttgttgagtgcagcg
caagcccagcctagcgacataacatggcatgccgacctgcaacccttgttgcgacatgtt
ttgctccgcgccagcgacggcgcgggcaagaatatgaggcttcgtgtgcctgccgatcgg
cggtggcccgatcgggcaagttgggctgcccatggcgtggaagcgatggaggcgggaccc
actgcatatctgctaacagctcgagagtggcatccggagtggcttggtagcggagaacat
ggcgtgttcgccgataccttttccgacaagaaagtacgtcggatggtgcattgcgaggtg
gatcccttcattcatgatggaaccggctttacgaactattcgtccccgggtcaacgcgag
gcggtgcgtgccgcctttctgatcccagaaggcgataccctgatggtcaatttaccgacg
ggctctggaaaaagcttggtcgggcaggcccccgctttagtaaataaagaggatggccat
ctgaccatcttcgtcgtgccgacggtcgcccttgctctcgaccaagagcgcgctatgcag
caactgtttcgaagtaatggtccttcccgccccgactggccgctggcttggtacggcggc
ttatcgaaagaaaagcgtgccgagattcggcagcgtctgcgcaatggcacccagcgaatc
ctattcacctcaccagaagcgctcaccacttcgctactacgtgttgtgtcggatgccacc
accgacggcatgctgcggtacttcgtgattgatgaagctcacctggtcacccagtggggt
gacgagttccgtccttcctttcaggccttggcaggtctgcgccacagcctgcttcggttg
gcgccgcgtggttttcgaaccttgctaatgagtgccaccttcacggatgaaacggtagaa
acattggcgagtctatttggtccccctgaacgggtacaaatggtatcggcggtgcacctt
cgcccggaaccgcaatattggttctacaaggctgcatcgacgtacgaaaagcaagaacgc
gtgcttgaggcactgcgaaatgcgccgcgaccgttcattctttatgtcactaagcgagaa
gaaatcgcttcttggaacacagtgttgcgttctcgcggaggcctgcgccgcctagccacg
tttgacggcgggacgcccgatcgcgagcggcagcgaatcattttggagtgggcagccaat
cgcctagacggcattgtcgccacgtcagcttttggcgttggcctagataaaattgatgtg
cgcacggtgatccacgcgacgattccggaaactctcgatcgcttctatcaagaagtgggg
cgcggtggccgtgacggcaagtcgtcggtcagcctgttggtattcgacgataccgactgg
gctttaccggagcgactcgcaaagcccaagataatttccgatgagcttggcttcagccgc
tggaaggccatgtaccagtcacgccagccaactactgaagaggacttgtggggcatcaat
atcgacgctgtgcgcgaaggtttaccggggggaagcgaacacaacgttaactggaacatg
cgaacccttatcctgatggcgcgtgctggcctaataactctcgagctagaggtcaatcgc
gacgagcaggataccgagccgggcgaggatgcttcgtcaatgctagcggcaatggcaaac
gtgcgcgtacgaatccgaaacgacggccatcttatttccaaagtctgggaagacgtgatc
agagcctcgcgaaacaagacgctagaggcggctgagcggaacttgcaaatgatgcggcaa
ctgctgccccggtccagcggcctggaccagcagatcggtcaagaagtcggtgccacgctt
acacagttgtaccgcattcggtcgttgcgctggccggttcaggtaacgcaagtttgcggc
ggctgtccggcggatcgcttcgacactgaggatcgcaggcactatgccgaaccggttgtc
gtgccggtcagtcgtgtcctatcgtcgtccgccgacgcctggcgggaaaattttccttgg
gtggaccccgcttttgcctatgtcttctacgacgagagtcgacccagggacggcgtccga
caagccatcctgcaattcgctggatggctggtgcagtcatgctgcgtacgtgagttggca
gcccaccctgaatccccactggtgtgccttcctgagtgggcccagttatatcagttcgca
cgcgaccgggtactgctacatcggtcggttttagactccgagctggagccttactccccg
ctggcccgtttgacggtgctggaaccggactcctcccctgaactcatcatagatacccag
atgttgcagcgacccttccatgtcgtgctgttgccgctctgcatgccggatcctggtaat
agcttgcgccgtcttgccgacgtcaccccgaatgcgctgcatctggaaaaactaattcaa
gtgataacccaatga
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