Pseudomonas viridiflava: CFBP1590__3749
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Entry
CFBP1590__3749 CDS
T06554
Name
(GenBank) exonuclease SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
pvd
Pseudomonas viridiflava
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvd03400
]
CFBP1590__3749
DNA repair and recombination proteins [BR:
pvd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CFBP1590__3749
Archaeal homologous recombinant proteins
CFBP1590__3749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
SMS11335
UniProt:
A0A1Y6JN08
LinkDB
All DBs
Position
I:4168241..4169485
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AA seq
414 aa
AA seq
DB search
MRLFHTSDWHLGQNLHGQERDFEHACFLTWLLARLAERQPDVLLIAGDIFDTVNPPVKAQ
ERLYDFIVNAHEQNPLLTIVMIAGNHDSGSRIELPAPLMRRLRTHALGRVLWLDEGVLDA
ERLLLPLPDAEGQVRAWCLALPFLRPAEVTGPTLGDDYLKGIARVHERLIEAANLKRQPG
QALIAVSHAHMAGGSVSEDSERSLIIGNAEALPASLFGPSITYVALGHLHKPQRVNGEER
IRYSGSPIPLSFSEIGYQHQILEINCDGETLTSVDTCLIPRAVNLQRLGPAPLAELLVQL
KELPNVDLLADPDRQPWLEVRVRLDEPQPDLRNQIETALQGKAVRLVRIGAEYAGKGSAV
GSDDDAALIELDQLSPQELFSRAWQDNFGSEVDEQTLTDFATLLREVQQESEQP
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttcacacctccgactggcatctgggtcagaaccttcacggtcaggagcgc
gatttcgaacacgcctgctttctgacctggctgctggcccgtctggccgagcgccagcct
gatgtgctgttgatcgcgggcgacatcttcgacaccgtcaacccgccggtcaaagcccag
gagcggctgtacgacttcatcgtcaatgcccacgaacagaacccgctgctgaccatcgtc
atgatcgccggaaaccacgactcaggctcgcgcatcgaactgcccgcgccgctgatgcgt
cgtctgcgcacccacgcgctcggccgtgtgttatggctggatgaaggcgtgctggacgcc
gagcggctgctattgccactgcccgatgcggaaggtcaggtccgagcgtggtgcctggcg
ttgccgttcctgcgccccgccgaagtcaccggcccgacgctgggcgacgattacctgaaa
ggtatcgccagagttcacgagcgcctgatcgaagccgccaacctcaaacgccagccaggt
caggcgctgatcgccgtgagtcatgcgcacatggccggtggttcggtgtccgaagactcc
gagcgcagcctgatcatcggcaacgccgaagccctgcccgccagcctgttcgggccgagc
atcacctacgtcgccctcggccatctgcacaagccgcaacgggtcaacggtgaagagcgc
attcgctacagtggctcgccgatcccattgtcattctcggaaatcggctatcagcaccag
attctggaaatcaactgcgacggtgaaaccctgaccagcgtcgacacctgcctgattcca
cgcgccgtcaacctgcaacgcctgggccctgcaccgctggccgaactgctggtgcagctc
aaggaactgcccaacgtcgatctgttggccgacccggatcgacagccgtggctggaggtg
cgcgtgcgcctcgacgagccgcagccggacctgcgcaaccagatcgaaaccgccctgcag
ggcaaggccgtgcgactggtgcgcatcggtgccgaatacgcaggcaagggcagcgccgtc
ggcagtgatgacgatgccgcgctgatcgaactggatcagctcagcccgcaggaactgttc
agccgcgcctggcaggacaacttcggcagcgaggtcgatgaacagaccctgaccgacttc
gccacactgttgcgtgaagtgcagcaggagagcgaacagccatga
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