Pseudomonas viridiflava: CFBP1590__3750
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Entry
CFBP1590__3750 CDS
T06554
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pvd
Pseudomonas viridiflava
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvd03400
]
CFBP1590__3750
DNA repair and recombination proteins [BR:
pvd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CFBP1590__3750
Archaeal homologous recombinant proteins
CFBP1590__3750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_21
SMC_N
nSTAND3
Calmod_bind_M
RsgA_GTPase
AAA_22
MMR_HSR1
Motif
Other DBs
NCBI-ProteinID:
SMS11336
UniProt:
A0A1Y6JN26
LinkDB
All DBs
Position
I:4169482..4173129
Genome browser
AA seq
1215 aa
AA seq
DB search
MKILAIRLKNLASLAGPFELDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAIPR
LSNIGQSKVPDIDGDITTSDPRTLLRRGTGSGYAEVDFIGIDQRRYRARWETNRARDNAA
KKLQASRQTLTDLDSEQILSNQSKREFEQLIESRLGLNFEQFTRAVMLAQSEFSAFLKAD
DKERSELLEKLTNTAIYSQLGRRAYSKSKEAEEALKALTAQASHISPLDPEQLAELEQRM
SDAQQQLKLHQAQQRQLELQQQWLTELHRLRDEQLAAQKSLTGAQQVWDDQSSQRQTLGQ
LERLGPQRHRFARRITLNAQLAPLAEQIRQHHEQQIALQTGQQQLHNQRSQAQLRLQDAQ
QAHNTAKPLLQQAFDAQSTLNRLAQELAKASEHQQQAEHLCTQGQTGLDILLDQQQQVAQ
RLERIAGQLADSSDLAPLAQGWNAWRDRLKTLTLTANRLKHGNRELPALQQRASEAEQQL
TEQRNALELLYREADCEVAAVTEQLQILGSLLQDNRKQQRAFEELTRLWASQQDIEHQLQ
ALTRQQQEAQQERESLVTQGIKVKDELTVAEQTLNVTRQLLERQRLARSASVEELRTQLQ
DDQPCPVCGSAEHPWHQPQALLQSLTQHDEDEQASAQKAVDTLTEQRNQLREQVGGIIAR
QKELLRQHDQLTQRHQTLAPDLEAHPLGAQLLDRDPAKRDAWLSQQLSHLNEIILRDEQR
QQALLNLQKDAARLQQSVQTAQEASQAAAHHVTEQLQQLSADQQRLDEELAALAPLVSSQ
TLDGLRSDASTTVMQLEQQVVQRLDQLEQQGEEQQEQRERQQRIDSEQVEQKNRLQRVTE
QQQAVAALSEQQQASQQRLQDLLGDHTSAEQWQQTLEHAVEQARQAESSAAQSLQDIQSQ
LIQLAAELKSGEQQQQALQQELTELDATLTDWRTQHAELDDAALDTLLTYDDEQVEQLRQ
QSQAAEKALEQARILLNEREQRVQQHQAQHAGLTDSDALNVALLQAQEQTALSEQHCAEL
RAQLSEDQRRRNANSELQTRINDATGEYQRWARLAALIGSAEGDKFRKIAQAYNLDLLVH
HANAQLKQLVRRYRLKRGGSMLGLLVLDTEMGDETRSVHSLSGGETFLVSLALALGLASM
ASSTLRIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVGVISHVQEMHERIPVQIKV
RRQGNGLSTIEVGSS
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgaagattcttgccattcgcctgaaaaacctggcctcgctggccggaccgttcgaactg
gacttcaccgcagaacccttggccagcgccggcctgttcgccattaccggcccgaccggt
gcaggcaagagcacgctgctcgatgcgttgtgcctggcgctgttcggggccattccgcgg
ctgagcaacatcggccagtcgaaggtccccgacatcgacggcgacattaccaccagcgat
ccacgcaccctgctgcgccgtggcaccggcagcggttacgccgaagtggacttcatcggc
atcgaccaacgccgctatagggcacgctgggaaaccaaccgcgcgcgggacaacgccgcg
aagaaacttcaggccagccgccagaccctgaccgatctggacagcgagcagatcctcagc
aatcagagcaaacgcgaattcgagcaactgatcgaaagccgtctgggcctcaatttcgaa
cagttcacccgtgccgtgatgctcgcccagagcgagttcagcgcctttctcaaggccgac
gacaaggaacgcagcgaactgctggagaagctgaccaacacggcgatctacagccagctc
gggcgacgcgcctacagtaagagcaaggaagccgaagaagccctcaaggccctgaccgcc
caggccagtcatatcagcccgctggatcccgaacagcttgccgagctcgagcagcgcatg
agcgatgcccagcaacagctcaagctccatcaggctcaacagcgccagctggaactgcag
cagcaatggctgaccgaactgcatcggctgcgcgacgaacaactcgccgctcagaaaagc
ctgaccggcgcgcagcaggtgtgggacgaccagagcagccagcgtcagacactggggcag
cttgaacgcctcggtccgcaacggcaccgcttcgcacgccggatcaccctgaacgctcag
ctcgcgccactggccgagcagattcgccagcaccacgagcagcagatcgcgctgcaaacc
ggccagcagcagttgcacaatcaacgcagccaggcgcagcttcggttacaggacgcccag
caggcgcacaacaccgccaaaccactgttgcagcaggcgttcgatgcgcaaagcacgctg
aaccgcctcgctcaggaattggccaaggcctcggaacaccagcagcaggccgagcacctc
tgcacccagggccagaccggcctggacattctgctcgaccagcagcaacaagttgcccag
cgtcttgagcgcatcgccggacaactggcggacagcagcgatctggcaccgctggcccaa
ggctggaacgcgtggcgcgaccgcctgaaaaccctgacgctcactgccaatcgcctcaag
cacggcaatcgtgagctgcctgcgctgcaacagcgcgccagcgaggccgagcaacaactg
actgaacagcgcaacgcgctggaattgctgtaccgcgaggccgattgcgaagtcgctgcc
gtcaccgaacagctgcagatcctcggcagcctgttgcaggacaaccgcaagcagcagcgc
gctttcgaggaactgacgcgtctgtgggccagccagcaggacatcgaacaccaattgcag
gcgctgactcggcagcagcaggaagcccagcaggaacgcgagtcactggttacccagggc
atcaaggtcaaggacgagctgaccgtagccgaacagacccttaacgtgacccgccagttg
ctggagcgccagcgtctggcccgcagcgccagcgtcgaagaactgcgtacccagttgcag
gacgaccagccctgcccggtctgcggcagtgccgagcacccgtggcatcagccgcaagcc
ttgctgcaaagcctgacccaacacgacgaagatgagcaggccagcgcacaaaaggccgtc
gacaccctgaccgagcagcgcaaccaattgcgcgagcaggtcggcggaatcatcgcccgg
cagaaagaactgctacgccagcacgaccaactgacgcaacgccatcagacactggctccg
gaccttgaagcgcatccgctcggcgcccagttgctggaccgtgaccctgccaaacgcgat
gcctggctgagccagcagctcagccacttgaacgaaatcattctgcgcgacgagcagcgc
cagcaagccctgctcaatctgcagaaagatgccgcacgcctgcagcagtcggtgcagacc
gcgcaggaagccagtcaggccgcagcccatcacgtgaccgaacagctccagcaactgagc
gctgatcagcagcgtctagacgaagaactggctgcactcgcgccgctggtgtcttcgcag
actctggatgggctgcgcagtgatgcctcgaccaccgtgatgcagctagagcagcaagtg
gtgcagcgcctcgatcaactggagcagcaaggcgaagagcagcaggaacagcgtgaacgc
cagcagcgcatcgacagcgaacaggtcgagcagaagaaccgtctgcagcgtgttacagaa
cagcagcaggccgtggccgccctcagcgaacagcagcaggcaagccagcaacggttgcag
gacctgctgggcgaccacaccagcgccgagcagtggcagcagacgctggaacacgccgtc
gagcaggcccgtcaggccgaaagctcggccgcccagtctctgcaggatatccagagtcag
ctgatacagctggctgccgaactcaagtccggtgagcaacagcagcaggccttgcagcag
gaactgacggagctggacgccacccttacagactggcgcactcagcacgcagaactggat
gacgcggcgctggacacgctcctcacctacgatgacgagcaggtcgagcagttgcgccag
cagtcgcaggcagccgagaaagcgctggagcaggcgcgaatcctgctcaacgaacgcgaa
cagcgcgtgcagcagcatcaggcgcaacatgccggcctgaccgacagcgacgcgttgaat
gtcgccctgttgcaggcgcaggaacagacggccctgagcgaacagcactgtgccgaactg
cgcgcgcaactgagcgaagaccagcgccgccgcaacgccaacagtgaattgcagacgcgc
atcaacgacgccaccggcgaataccaacgctgggcacgactggctgcgctgatcggctcg
gccgaaggcgacaaattccgcaagatcgcccaggcctacaacctcgatctgctggtgcac
cacgccaacgcgcaactgaaacaactggtgcgccgctaccgcctcaagcgcggcggcagc
atgctcggcctgctggtgctggacaccgagatgggcgacgagacccgatcggtgcattca
ctgtcgggcggagaaacctttctggtgtcgctggctttggcgctgggcctggcatcgatg
gcgtccagcaccttgcgtatcgaatcgctgtttatcgacgaaggcttcggcagcctcgac
ccggagtcgctgcaactggccatggatgcactggacggcctgcaggctcagggtcgcaag
gtgggcgtcatttcccacgttcaggaaatgcacgagcgcatcccggtacagatcaaggtc
cgccgtcagggcaacgggctgagcaccatcgaagtcggcagctcatga
DBGET
integrated database retrieval system
