Pseudomonas viridiflava: CFBP1590__3838
Help
Entry
CFBP1590__3838 CDS
T06554
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pvd
Pseudomonas viridiflava
Pathway
pvd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFBP1590__3838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvd03019
]
CFBP1590__3838
03400 DNA repair and recombination proteins [BR:
pvd03400
]
CFBP1590__3838
Enzymes [BR:
pvd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFBP1590__3838
Messenger RNA biogenesis [BR:
pvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFBP1590__3838
DNA repair and recombination proteins [BR:
pvd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CFBP1590__3838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
ResIII
Sigma70_r4_2
HTH_23
GerE
Sigma70_r1_2
HTH_29
Motif
Other DBs
NCBI-ProteinID:
SMS11424
UniProt:
A0A1Y6JNP7
LinkDB
All DBs
Position
I:complement(4267196..4269325)
Genome browser
AA seq
709 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVANGGDALVLMPTGGGKSLCFQVPGLLRDGLC
VVVSPLIALMDDQVATLEELGVSAAALNSTLSAEQQRDLANRIRQGEVKMLYLAPERLVQ
PRMLSFLQNLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPNVPRIALTATADKRT
REEIVTRLHLQNAERFLSSFDRPNIFYRIVPKESPRKQLLAFLSERRSDAGIVYCLSRKK
VDEVAVFLSDNGYPALPYHAGLPSETRAANQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLMLKQMLQNSEGDERHKRLEHHK
LDAMLALCEETRCRRQTLLAYFDEDMPNPCGHCDNCVDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKSNDKVESFGHQHLSVFGIGKARSEGEWRSLFRQLVARGLADIDLE
GYGGLRLSDTCRPLLRGEVTLELRRDLKPQTTAKSHSGSPASQLVRGEEREQWEALRTLR
RKLAEEHAVPPYVIFPDSTLLEMLRSKPGSMAEMAKVGGVGARKLERYGEAFLEVLSGKA
EAPRVVTDLRHELISLAHAGMTPAQIAGQLQCSEKNVYTLLAEAIGKQQLSVEQALDLPE
DLLGEIQDAFLDGEGELPPVSSVIEQFTGRVPEGVLYCVRAALQSEFEM
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggcacaacgcgtacttaaagacatcttcggctatgacagcttccgtggt
cgccagggtgccattatcgaacgtgtagccaacggcggcgatgcactggtgctgatgccg
accggcggcggcaagtccctgtgtttccaggttcccggcttgttgcgagacggcctgtgt
gtggtggtttcgccgcttatcgcactgatggacgatcaggtggcgaccctcgaagaactg
ggtgtttctgccgctgcgctcaactccacactcagtgccgaacagcagcgcgacctggcc
aaccggattcgtcagggcgaagtcaaaatgctttacctggcaccggagcgcctcgttcaa
ccgcgcatgctgtcctttctgcaaaacctcgatatcgcactgttcgccatcgatgaagcg
cactgtgtttctcaatggggacatgacttccgcccggaatacctgcaactgggtcaactg
gccgaactgtttcccaatgtgccgcgcatcgccctgacggccaccgccgacaagcggaca
cgtgaagaaatcgtcacgcgtctgcacctgcagaatgccgaacggtttctgtccagtttc
gaccgccccaacatcttctatcgcatcgtgcccaaggaatcgccacgcaagcaattgctg
gcgtttctgtccgagcgtcgcagcgatgcagggatcgtctattgcctgtcacgcaagaaa
gtcgacgaggtcgcggtgttcctcagcgacaacggctacccggcgctgccgtatcacgca
gggctgccttccgaaacccgtgccgccaatcagaagcgcttccttaatgaagaaggcctg
attatggtcgcgaccatcgcgttcggcatgggaatcgacaagcccaacgtccgtttcgtc
gcacacatggacctgcccaagtcgctggaagcctactaccaggaaaccggccgggcaggg
cgtgacggtctgcctgcggatgcctggatggcctacggtctgcaggacgtgctgatgctc
aagcagatgctgcagaactccgaaggtgatgagcgacacaagcggctcgaacaccacaag
ctcgatgcgatgctggcgctgtgcgaagaaacccgctgccgtcgccagacgttgctcgcc
tatttcgatgaagacatgcccaacccctgcggccattgcgacaactgtgtcgatggcgtg
cagacctgggacgctaccgagcctgcgcgtcaggcgctttcggccatttatcgcaccggc
cagcgctatggcgtggggcacctggtggacgtcctgctcggcaagtccaatgacaaggtc
gaaagcttcggccatcagcacctgtcggtgttcggcatcggcaaggcacgctccgagggt
gaatggcgctcgttgttccggcaactggtcgcgcggggtctggcggacatcgatctggaa
ggctatggcggactgcgtctgagtgacacctgccgtccgctgctgcgcggcgaagtcacg
ctggaactgcgtcgtgatctcaagccgcagaccaccgccaagagccattccggcagcccg
gccagtcaactggtgcgaggcgaggagcgcgagcagtgggaggccctgcgcacgctgcgc
cgcaagctggccgaagagcacgcggtaccgccttacgtcatcttcccggattcgaccctg
ctggaaatgctgcgcagcaaacccggttctatggctgaaatggccaaggtcggtggcgtc
ggcgcgcgcaagctggagcgctacggcgaggcgtttctggaagtgctcagcggcaaggcc
gaagcgccacgggtggtcaccgacctgcgtcatgaactgatcagtctggcgcacgctggc
atgacaccggcgcagattgccggccagttgcagtgctcggaaaagaatgtctacaccctg
ctggccgaagccatcggcaaacagcaattgtccgtcgaacaggcactggatctgcccgaa
gacttgctgggcgagattcaggatgcgttcctggatggggaaggtgaactgcctccggtt
tcttcagtgatcgaacaattcactgggcgtgttcccgaaggtgtgctgtattgcgtgcgc
gccgccctgcaatccgaattcgagatgtag
DBGET
integrated database retrieval system
