Pseudomonas viridiflava: CFBP1590__3934
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Entry
CFBP1590__3934 CDS
T06554
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pvd
Pseudomonas viridiflava
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvd03016
]
CFBP1590__3934 (rnd)
Enzymes [BR:
pvd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CFBP1590__3934 (rnd)
Transfer RNA biogenesis [BR:
pvd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CFBP1590__3934 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
SMS11520
UniProt:
A0A1Y6JQT4
LinkDB
All DBs
Position
I:complement(4376211..4377344)
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AA seq
377 aa
AA seq
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MAIDIHWIRDDDSLALHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGSRAWLIDPL
LINDWAPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSMGY
SRLVQEVLNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFTILRPRLSDEKFAWL
LEDGAELVANLRREIDPYEVYREAKLAWKLSRAQLAVLRGLCAWREVQARARNVPRNRIV
REHSLWPLAKTQPDNLGALARIEDMHPRTVRQDGEFLLELIKTAASVPPEEWPPALPEPL
PVDAAGSLKRLRAIGQEFAERLDMAPELMLRKKTLEALLKSGYPDGPYQLPDSLRGWRRE
LMGQALLDSLATPGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacgacgacagcctcgccctgcattgcgctcag
tggcagtctctgccgttcgttgcgctcgacaccgaattcatgcgggtcgacactttttac
cccatcgctgccttgctgcagatcggcgacggctcgcgtgcctggctgattgatccgttg
ttgatcaacgactgggcgccgctgtctgcgctgcttgagaaccctgacgtcatcaaggtc
gttcacgcgtgcagcgaagacctcgaagtcctgctgcgccttaccggcagcctgccggtt
ccgctgttcgacacccagctggcagccgcctacctgaacctcgggttttccatgggctac
tcgcgtctggtgcaggaggtcctcaacatcgacctgcccaagggcgagacccgttcggac
tggctgcagcgtccgctgtccgagacccagatcagttatgccgccgaagatgcggtgcat
cttgccgagctgttcacgatcctgcgtccgcgtctttccgacgagaagttcgcgtggctg
ctcgaggatggcgcggagctggttgccaacctgcgtcgtgaaatcgatccttatgaggtc
tatcgcgaagccaagctggcctggaagctgtcccgtgcccagttggcagtattgcgtggc
ttgtgtgcctggcgcgaagtgcaggcccgtgcccgcaacgtgccgcgcaaccgcatcgtg
cgtgaacactcgctctggccgctggccaagacccagccggataacctcggcgcgctggcc
cgcatcgaagacatgcacccgcgcaccgtgcgtcaggatggcgaattcctgctcgaactg
atcaagaccgccgccagcgtgccgcccgaagagtggccaccggcgttgcccgagcctctg
cctgtcgatgctgccggttcgctcaagcgcctgcgtgccattggccaggagttcgccgaa
cgactggacatggcgcccgagctgatgttgcgcaagaagaccctcgaagcgctgctcaag
agcggctaccccgatggtccttaccaattgcctgattcgctgcgtggctggcgtcgcgaa
ctgatgggccaggcgctgctcgacagcctggcaacgccgggagaacagccttga
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