Pseudomonas viridiflava: CFBP1590__4057
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Entry
CFBP1590__4057 CDS
T06554
Symbol
dapE
Name
(GenBank) Succinyl-diaminopimelate desuccinylase
KO
K01439
succinyl-diaminopimelate desuccinylase [EC:
3.5.1.18
]
Organism
pvd
Pseudomonas viridiflava
Pathway
pvd00300
Lysine biosynthesis
pvd01100
Metabolic pathways
pvd01120
Microbial metabolism in diverse environments
pvd01230
Biosynthesis of amino acids
Module
pvd_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
CFBP1590__4057 (dapE)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvd01002
]
CFBP1590__4057 (dapE)
Enzymes [BR:
pvd01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.18 succinyl-diaminopimelate desuccinylase
CFBP1590__4057 (dapE)
Peptidases and inhibitors [BR:
pvd01002
]
Metallo peptidases
Family M20
CFBP1590__4057 (dapE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M20
M20_dimer
Peptidase_M28
BNR_2
Motif
Other DBs
NCBI-ProteinID:
SMS11643
UniProt:
A0A1Y6JTL1
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All DBs
Position
I:4507447..4508598
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AA seq
383 aa
AA seq
DB search
MTAPSDLSPTLQLACDLIRRPSVTPVDADCQTVMMQRLGDAGFKLEPMRIEDVDNFWATH
GNHEGPVLCFAGHTDVVPTGPVTAWENDPFDALIDEHGMLCGRGAADMKGSLAAMLVAAE
RFVADHPDHRGSVAFLITSDEEGPAHHGTKAVVERLAVRKERLDWCIVGEPSSTTLVGDV
VKNGRRGSLGAKLTVRGKQGHVAYPHLAKNPIHLTAGALAELAAEHWDNGNDFFPPTSFQ
ISNLNSGTGATNVIPGDLVAVFNFRFSTESTVEGLQQRVAAILDKHELDWHIDWALSGLP
FLTEPGALLDAVSASIKSVTGRDTKASTSGGTSDGRFIATLGTQVVELGPVNATIHQVNE
RILASDLDVLTEIYYQTLVKLLA
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgacggccccttccgatctttcgcctaccctgcagcttgcctgcgacctgatccgtcga
ccgtcggtcacaccagtcgatgccgactgccagaccgtgatgatgcagcgcctgggcgat
gccggtttcaagcttgagccgatgcgtatcgaagacgtggacaatttctgggcgacccat
ggcaaccacgaaggtccggtgctgtgtttcgccggtcacaccgatgtggtgccgaccggc
ccggtcacggcctgggagaacgacccgttcgatgcgttgatcgacgagcacggcatgctg
tgcggacgtggcgcagcggacatgaagggcagtctggcggccatgctggtggcggccgag
cgtttcgtggctgaccatccggaccaccgtggttcggttgcatttctgatcaccagcgat
gaagagggtccggcgcatcacggcaccaaggcggtcgtcgagcgtctggcggtgcgcaag
gagcgtctggactggtgcatcgtcggcgagccgtcgagcaccacgctggtgggcgatgtg
gtcaagaacggtcgtcgcggttcgctgggcgccaaactcacggtgcgtggcaagcagggt
catgttgcctatccgcatctggcgaagaacccgattcacctgactgcaggcgcgctggcc
gagctggctgccgagcactgggataacggcaacgacttctttccaccgaccagcttccag
atttccaacctcaattctggcaccggcgcgaccaacgtgattccgggcgatctggtcgcg
gtgttcaatttccgcttttcgaccgagtcgaccgtcgaaggactgcagcaacgcgtagcc
gccattctcgacaagcatgaactggactggcacatcgattgggcgctgtccggcctgcca
ttcctgaccgagccgggagccctgctggacgctgtgtctgcgagcatcaagagcgtgacc
ggccgcgacaccaaggcttcgaccagcggcggtacgtccgacgggcgcttcatcgcgacg
ctgggcactcaggtggtagaactgggcccggtcaacgcgacgatccatcaggtcaacgag
cgcattctggccagcgatcttgatgtattgaccgagatctactaccagacactggtcaag
ttgctcgcctga
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