KEGG   Pseudomonas viridiflava: CFBP1590__4304
Entry
CFBP1590__4304    CDS       T06554                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pvd  Pseudomonas viridiflava
Pathway
pvd02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pvd00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CFBP1590__4304
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvd03021]
    CFBP1590__4304
Transcription machinery [BR:pvd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CFBP1590__4304
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_ECF Sigma70_r4 HTH_24 HTH_20 GerE HTH_23 HTH_Crp_2 Xre-like-HTH Crp HTH_10 HTH_11 HTH_5 HTH_IclR TnsD HTH_40 DUF8658 HTH_36 HTH_38
Other DBs
NCBI-ProteinID: SMS11890
LinkDB
Position
I:4774637..4775140
AA seq 167 aa
MHSTHPALTHTVDGLFRAHNAWLTGWLRRRLGCPHSAADLAQDTFIKVLGARDTQQIVEP
RAFLTTIARRVLCNHYRRQDLERAYYQALSELPESVAPSEEERAIILETLVELDQLLDGL
PGPVKSAFLMSQVDGLSHGEIASALGISIATVKRHLNKAALRCYFAL
NT seq 504 nt   +upstreamnt  +downstreamnt
atgcacagcacccaccctgctctcacccacaccgtcgacggcctgttccgggcgcataac
gcctggctgacgggctggttgcggcgcaggctcggctgtccgcacagtgccgcggatctg
gcgcaggacacgttcatcaaggtgctgggcgcgcgcgacacgcagcagatcgtcgagccg
cgcgcgttcctgaccaccatcgcccgacgcgtgctgtgcaatcactaccgacgtcaggat
ctggaacgcgcttattatcaggcgctgtccgaactgcccgagagcgtggcgccatccgaa
gaagaacgggcgatcattcttgaaacgctggtggaactggatcaattgctggatggcctt
ccaggcccggtgaaaagcgcgttcctgatgtcgcaggttgatggcctgagccatggcgaa
atcgccagcgcgttgggtatttccatcgcaacggtcaaacgccacctgaacaaggccgcc
ctgcgctgctacttcgccctatga

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