Pseudomonas viridiflava: CFBP1590__4685
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Entry
CFBP1590__4685 CDS
T06554
Name
(GenBank) AraC family transcriptional regulator
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
pvd
Pseudomonas viridiflava
Pathway
pvd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CFBP1590__4685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvd03000
]
CFBP1590__4685
03400 DNA repair and recombination proteins [BR:
pvd03400
]
CFBP1590__4685
Enzymes [BR:
pvd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
CFBP1590__4685
Transcription factors [BR:
pvd03000
]
Prokaryotic type
Helix-turn-helix
AraC family
CFBP1590__4685
DNA repair and recombination proteins [BR:
pvd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CFBP1590__4685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
TetR_N
Motif
Other DBs
NCBI-ProteinID:
SMS12271
UniProt:
A0A1Y6JT05
LinkDB
All DBs
Position
I:complement(5212629..5214074)
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AA seq
481 aa
AA seq
DB search
MNTLDPTICYAAFIARDRRFDGWFFMGVSSTGIYCRPMCPVRAPQARNCSFYRTAAAAEQ
AGFRPCLRCRPELAPGQSLLDMSSRLAQAAARLIEEGFLSGRTLDALAERVGVTARHLRR
IFEAEFGVSMIDFAQTQRLLIAKRLLTDTGLSMTEVALAAGFGSVRRFNDVFQARYGLNP
TRLRKAVHKADDAELRFELSYRPPFSWKGVLAFLAHRCIAGVEHVSDDVYARVIEVEHAG
RKVSGWISVTDAPQRHALVVTMSASLQSAVAVVLGRVRRVFDTGCRPDLVDAHLGPLIGD
LHGMRVPGAFDGFEIAVRAVVGQQISVLNARAILGRIAERFGTPVSTAPFGLHHAFPTAQ
AIAALHYEDLIATGLIRIRAEAIIAVAEEVAAGRILLEPLVPLDETLAALRHIRGIGEWT
VQYIAMRALGWPNAFPEGDAVLKKRLGCTTAAQLNEHASQWAPWRAYATVHVWHQREERP
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaacactctcgatcccactatctgctacgccgcgttcatcgccagggaccgccggttt
gacggctggtttttcatgggcgtgtcgtccaccggtatttattgccggccgatgtgcccg
gtgcgtgcgccgcaggccagaaactgcagtttctacagaacggctgcggctgccgagcag
gcgggttttcgcccttgcctgcgttgccgcccggaattggcgcccggacaaagcctgctg
gacatgtcgagcaggctggcacaggccgcggcccggttgatagaagagggctttctgagc
ggcagaacactggatgcgctggctgagcgagtcggtgtcacggcacggcacctgcgacgg
attttcgaagccgagtttggcgtctcgatgattgatttcgcgcagacgcaacgtttgttg
atcgccaagcgcctgttgaccgacaccggattgtccatgaccgaggtggcgctggcggca
ggttttggcagcgtgcgacgtttcaacgatgtctttcaggcgcgctacggcctgaatccg
acgcggctgaggaaggccgtgcacaaagccgacgacgcagagctgcgctttgaactgtcc
taccggccgccattttcctggaaaggcgtgctggcgtttctcgcgcatcgctgcattgcc
ggagtcgagcatgtaagtgacgacgtttatgcgcgggtcattgaagtcgagcatgcgggg
cgcaaggtctctggctggatcagcgtgaccgatgcaccccagcggcatgcgttggtggtg
accatgtcggcctcgttgcaatcggcggtcgcggtggtgctagggcgggtgcggagggtg
ttcgacactggctgccgacctgatctggtcgatgcgcaccttggaccgcttattggcgat
ctgcacggcatgcgtgttcccggcgcgttcgacggcttcgaaattgcggtgcgggcggtg
gtcggccagcagatctcggtgctcaatgcacgagcgattctgggccggattgctgaacga
ttcggcacaccggtcagcactgcacccttcgggctgcatcatgcgtttccgaccgcgcag
gccatcgcagccctgcattatgaggacctgatcgccaccggcctgatccgcattcgcgcc
gaggcgattatcgcggttgccgaggaagtggcggcggggcggatcctgcttgagccgctg
gtgccgctggacgaaacgctggctgcgctgcgacacattcgcggcatcggcgagtggacc
gtgcaatacattgccatgcgcgccctgggctggcccaatgcgtttcccgaaggcgatgcg
gtgctcaaaaagcgcctgggttgcacgacggccgcgcaactcaacgagcatgcgagccag
tgggcgccgtggcgagcctacgcgaccgtgcatgtctggcatcaacgtgaggagagacca
tcatga
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