Pseudomonas viridiflava: CFBP1590__4756
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Entry
CFBP1590__4756 CDS
T06554
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pvd
Pseudomonas viridiflava
Pathway
pvd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFBP1590__4756 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvd03019
]
CFBP1590__4756 (rnr)
03016 Transfer RNA biogenesis [BR:
pvd03016
]
CFBP1590__4756 (rnr)
Enzymes [BR:
pvd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CFBP1590__4756 (rnr)
Messenger RNA biogenesis [BR:
pvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFBP1590__4756 (rnr)
Transfer RNA biogenesis [BR:
pvd03016
]
Prokaryotic type
tRNA degradation factors
CFBP1590__4756 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
SMS12342
UniProt:
A0A1Y6JU54
LinkDB
All DBs
Position
I:complement(5286189..5288825)
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AA seq
878 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILQHLAERGSPASREQLVEEFGLTTEDQFEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVISRGHESIVGRYFEESGIGFVIPDNPKIQQEV
LVTPGRNNGAKIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEDKDKEHRVDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDAESQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKTGEMTDYVFYEAVIHSHARLTYNKVSTILEQPKTAEAKSLRGEYGDVVP
HLKQLYALYKVLLGARHVRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLE
TVRDRPDYHLIQTVMLRSLSQAVYSSDNNGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIRSKQDTPHVRRAGAATIPKARIYPYDEALLEQMGEQCSMSERRADEATRDVVNWLKCE
YMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPLHHRLAGERTG
RNFRLGDTVEVKVMRVDLDERKIDFEISEKSAATTSSPGRKSRGQETAAPAAAAEKEKAP
AKSGRRTAATKEAPVEAYRPSDAAAKNAEVRKSREMKKALLAEAKGGSKASSGKSERPDS
GSAPSSGKTSKHRKGGSSKTGSASSSKGGSVRKPKAKS
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatacgaaaac
cctattcccagccgtgagctgatccttcagcaccttgccgagcgtggttcgccggccagt
cgcgagcaactggtcgaagagttcggcctgaccactgaagaccagttcgaggctctgcgc
cgtcgccttcgtgcgatggagcgcgacgctcaattgatctacacacgtcgtggcacttat
gcgccagtggacaagctcgacttgatcctcggccgcatctccggccatcgcgacggcttc
ggctttctggtccctgatgacggttccgatgacctgttcatgagcccggcgcagatgcgt
ctggtgttcgacggcgaccgtgccttggctcgcgtttccggtctggaccgtcgcgggcgc
cgtgaaggcgtgattgtcgaggtcatttcccgtggtcacgaatccatcgtgggtcgctac
ttcgaagagagcggcattggtttcgtcattccggacaatccgaaaatccagcaggaagtg
ctggtgacaccgggtcgcaacaacggcgcgaagatcgggcagttcgtcgaggtgaaaatc
acccattggccaacgccgcgcttccagccgcaaggcgatgtggttgaagtggtcggcaac
tatatggcgccgggcatggaaatcgacgtcgcgctgcgcacctacgacattcctcatgta
tggcctgaagccgtgctcaaggaagcggcgaaactcaagccggaagtcgaggacaaggac
aaggaacaccgcgtcgatctgcgtcacctgccgttcgtgaccatcgacggtgaagatgca
cgcgatttcgacgatgccgtctattgcgaagccaagccgggcaagctgcgtctgttctcc
ggtggctggaagctctacgtggcgattgccgacgtatcaagctacgtgaagattggctct
gccctggatgccgaatcccaggtgcgcggcaactcggtgtacttccccgagcgtgtcgtg
ccgatgctgcctgagcagttgtccaacggcctgtgctcgctgaacccgcacgtcgatcgt
ctggccatggtctgcgagatgaccatctccaagaccggcgagatgacggattacgtgttc
tacgaggctgttatccattcccatgcgcgcctgacctacaacaaggtcagcacgattctg
gagcagccgaaaacggctgaggccaagagtctgcgtggcgaatacggcgatgtcgttccg
catctcaagcagctttatgcgttgtacaaagtgctgctgggcgcgcgccatgtgcgtggt
gccattgacttcgaaacgcaggaaacccggatcatcttcggttccgagcgcaagattgcc
gagattcgtccgaccacgcgcaacgatgctcacaagctgatcgaggagtgcatgctggcg
gccaacgtggccaccgctgaattcctgaagaagcacgaaatccctgcgctgtatcgcgtg
cacgatggcccgccgccagagcgtctggaaaagctccgtgctttcctgggtgagctgggt
ctgtcattgcacaagggcaaggatggtccgaccccgaaggattatcaggcgctgcttgaa
accgttcgtgaccgtccggactaccatctgatccagaccgtgatgctgcgttcgttgagc
caggctgtgtacagctcggacaacaacggccactttggtctgaactacgaagcctatacg
cacttcacctcgccgatccgtcgttacccggatctgctgactcaccgtgcgattcgcagt
gtgatccgttccaagcaggacacgccgcacgtgcgtcgtgccggtgctgcaactattccg
aaagcgcgcatctatccgtacgacgaagcgttgctggagcaaatgggcgaacagtgctcg
atgagcgagcgccgtgccgacgaagccacccgcgacgtggtgaactggctcaagtgcgaa
tacatgaaagaccgcgtcggcgagtcgttcccgggtgtgattacggccgtcaccggcttt
ggtctgttcgtcgagctgaccgatatctatgtcgaaggtctggtgcacgtcactgccttg
ccaggtgactactaccacttcgatccgctgcaccatcgtcttgccggcgaacgcaccggg
cgtaatttccgcctgggcgacacggtagaagtgaaggtcatgcgcgtcgatctggatgag
cgcaagatcgacttcgagatttccgagaagtctgccgcgaccacttcttcgccgggccgc
aagagccgtggccaggaaactgcagcgcctgctgctgccgccgaaaaggaaaaggctccg
gccaaatccgggcgtcgtacagcggctaccaaggaagcaccggtcgaggcctatcgcccg
agcgacgctgcggcgaagaacgcagaagtgcgcaagagccgtgaaatgaaaaaagccctt
ctggctgaagcgaagggtggtagcaaggcgtcgtcgggaaagtctgaaaggcctgattcg
ggctctgcaccttcttcaggcaagaccagtaaacatcgtaaagggggctcgtcgaaaacg
ggctccgcgtcatcgtccaagggcggtagcgttcgtaaacccaaggccaagtcatga
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