Pandoraea vervacti: UC34_05505
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Entry
UC34_05505 CDS
T03688
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pve
Pandoraea vervacti
Pathway
pve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UC34_05505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pve03019
]
UC34_05505
Enzymes [BR:
pve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UC34_05505
Messenger RNA biogenesis [BR:
pve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UC34_05505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Stealth_CR3
Motif
Other DBs
NCBI-ProteinID:
AJP56597
LinkDB
All DBs
Position
complement(1206090..1207505)
Genome browser
AA seq
471 aa
AA seq
DB search
MSFASLGLIAPLLRNVQALNYQTPTPVQAKAIPVVLAGNDVMAAAQTGTGKTAGFALPIL
QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVRTLVLDEADRMLDLGFARELDAVFAALPTQR
QTLLFSATFSDEIRAMAANRLRDPVDISVSAPNATASKIKQWVIPVDKRNKPDLFMHLVA
RNGWTHALVFVKTRNGVEYLASLLDEAGYAIDTIHGDKPQPARLRALERFKAGEVQMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLPREEEPGFEAEHRVPETNAAGQIIKKPKKPKKPKAPMAGQAGAGARQAPVKPS
TSPGGGNRRKPAATDAKSSRSGLFGAPKTPGSGVAATLQAAKKPSGGRGKR
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgcttcgcttggcctgatcgcgcccctgctgcgtaacgtacaggcgctcaat
taccagacacctacgccggtgcaggccaaggccattcctgtcgtgctcgcgggcaacgat
gtcatggccgcggcgcagaccggcacgggcaagacagcgggctttgcgctgccgatcctg
cagcggctcgtgcagcacggcccggcggtctcgagcaaccgggcgcgcgtgctggtgctg
gtacccacacgggaactggcggagcaggtgctgcaaagcttcgtcgaatatggcaaaggc
ctcgatctgcgttttctggccgcttacggcggcgtgagtatcaatccgcaaatgatgaag
ctgcgcaaaggcgttgacgtgctcgtcgccaccccgggtcgtttgctggatctgaatcgt
cagaacgcggtgcagttcgatcaggtgcgcacgctggtgctcgacgaggccgaccgcatg
ctggatctgggtttcgcgcgcgagctcgatgcggtgtttgcggcgttgccgacgcagcgt
cagacgctgctgttctcggcgacgttcagcgacgagattcgcgccatggccgcgaaccgc
ctgcgcgatccggtcgacatcagcgtaagcgcgcccaacgcgacggcaagcaagatcaaa
cagtgggtgattccggtcgataagcgcaacaagcccgatctgttcatgcatctcgtggcc
cggaacgggtggacgcacgcattggtgttcgtcaagacgcgcaacggcgtggaatacctc
gcatccctgctcgacgaagcgggttacgcgatcgacacgattcacggcgacaagcctcaa
ccggcgcgcctgcgggcactggagcgattcaaggctggggaagtgcagatgctggtcgcc
accgacgtggcggcacgcgggttggacatcgacgatctgccgctcgtcatcaatgtcgat
ttgcccatcgtcgcccaagattacgtgcaccgcatcggccgcaccggtcgcgcgggcgcg
agcggcgtggcggtctccctcgtctgcgccgacgaagcgccgcaactggccgcgatcgaa
gcgctgatccggcaaacgctgccgcgcgaggaagaacccggattcgaagcggagcaccgg
gtgccggagacgaacgcggcgggtcagatcatcaagaaaccgaaaaagccgaagaagccg
aaagcgccgatggcgggacaggcaggtgcaggcgcccgacaagcgccggtgaagccgtca
acctcgcccggcggcggcaatcggcgcaagccggcggcgaccgacgccaagtcgtcccgc
agcggcttgttcggcgcgcccaagacgcccggcagcggcgtagcggcgacccttcaggcc
gcgaagaaaccgtctggcgggcgtggaaaacggtga
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